Intron evolution within 23 organisms
Overview
This site contains supplementary information to
our analysis of alvelan intron evolution
(Csuros, Rogozin, Koonin Extremely intron-rich genes in the alveolate ancestors inferred with a flexible likelihood approach
, submitted).
For every orthologous gene family in the data set, the inferred intron histories are shown, along with
multiple alignments and gene structure annotation.
Phylogeny
Gene families
- KOG0004 (3 sites) Ubiquitin/40S ribosomal protein S27a fusion
- KOG0012 (24 sites) DNA damage inducible protein
- KOG0050 (27 sites) mRNA splicing protein CDC5 (Myb superfamily)
- KOG0073 (8 sites) GTP-binding ADP-ribosylation factor-like protein ARL2
- KOG0077 (11 sites) Vesicle coat complex COPII, GTPase subunit SAR1
- KOG0090 (7 sites) Signal recognition particle receptor, beta subunit (small G protein superfamily)
- KOG0094 (12 sites) GTPase Rab6/YPT6/Ryh1, small G protein superfamily
- KOG0103 (31 sites) Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily
- KOG0104 (44 sites) Molecular chaperones GRP170/SIL1, HSP70 superfamily
- KOG0114 (5 sites) Predicted RNA-binding protein (RRM superfamily)
- KOG0120 (18 sites) Splicing factor U2AF, large subunit (RRM superfamily)
- KOG0121 (8 sites) Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily)
- KOG0122 (13 sites) Translation initiation factor 3, subunit g (eIF-3g)
- KOG0126 (7 sites) Predicted RNA-binding protein (RRM superfamily)
- KOG0130 (4 sites) RNA-binding protein RBM8/Tsunagi (RRM superfamily)
- KOG0131 (14 sites) Splicing factor 3b, subunit 4
- KOG0147 (20 sites) Transcriptional coactivator CAPER (RRM superfamily)
- KOG0151 (24 sites) Predicted splicing regulator, contains RRM, SWAP and RPR domains
- KOG0174 (15 sites) 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3
- KOG0176 (14 sites) 20S proteasome, regulatory subunit alpha type PSMA5/PUP2
- KOG0177 (15 sites) 20S proteasome, regulatory subunit beta type PSMB2/PRE1
- KOG0181 (21 sites) 20S proteasome, regulatory subunit alpha type PSMA2/PRE8
- KOG0185 (10 sites) 20S proteasome, regulatory subunit beta type PSMB4/PRE4
- KOG0214 (23 sites) RNA polymerase II, second largest subunit
- KOG0215 (92 sites) RNA polymerase III, second largest subunit
- KOG0216 (57 sites) RNA polymerase I, second largest subunit
- KOG0226 (2 sites) RNA-binding proteins
- KOG0227 (13 sites) Splicing factor 3a, subunit 2
- KOG0260 (46 sites) RNA polymerase II, large subunit
- KOG0261 (56 sites) RNA polymerase III, large subunit
- KOG0262 (54 sites) RNA polymerase I, large subunit
- KOG0263 (12 sites) Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA)
- KOG0268 (25 sites) Sof1-like rRNA processing protein (contains WD40 repeats)
- KOG0270 (14 sites) WD40 repeat-containing protein
- KOG0276 (50 sites) Vesicle coat complex COPI, beta' subunit
- KOG0284 (19 sites) Polyadenylation factor I complex, subunit PFS2
- KOG0285 (26 sites) Pleiotropic regulator 1
- KOG0292 (44 sites) Vesicle coat complex COPI, alpha subunit
- KOG0293 (4 sites) WD40 repeat-containing protein
- KOG0301 (25 sites) Phospholipase A2-activating protein (contains WD40 repeats)
- KOG0302 (18 sites) Ribosome Assembly protein
- KOG0307 (37 sites) Vesicle coat complex COPII, subunit SEC31
- KOG0316 (17 sites) Conserved WD40 repeat-containing protein
- KOG0319 (31 sites) WD40-repeat-containing subunit of the 18S rRNA processing complex
- KOG0326 (27 sites) ATP-dependent RNA helicase
- KOG0328 (35 sites) Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily
- KOG0334 (38 sites) RNA helicase
- KOG0337 (16 sites) ATP-dependent RNA helicase
- KOG0338 (40 sites) ATP-dependent RNA helicase
- KOG0341 (31 sites) DEAD-box protein abstrakt
- KOG0343 (12 sites) RNA Helicase
- KOG0345 (33 sites) ATP-dependent RNA helicase
- KOG0347 (9 sites) RNA helicase
- KOG0355 (41 sites) DNA topoisomerase type II
- KOG0358 (28 sites) Chaperonin complex component, TCP-1 delta subunit (CCT4)
- KOG0362 (36 sites) Chaperonin complex component, TCP-1 theta subunit (CCT8)
- KOG0365 (24 sites) Beta subunit of farnesyltransferase
- KOG0366 (20 sites) Protein geranylgeranyltransferase type II, beta subunit
- KOG0370 (15 sites) Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase)
- KOG0378 (13 sites) 40S ribosomal protein S4
- KOG0402 (5 sites) 60S ribosomal protein L37
- KOG0411 (9 sites) Uncharacterized membrane protein
- KOG0414 (42 sites) Chromosome condensation complex Condensin, subunit D2
- KOG0415 (15 sites) Predicted peptidyl prolyl cis-trans isomerase
- KOG0416 (4 sites) Ubiquitin-protein ligase
- KOG0418 (17 sites) Ubiquitin-protein ligase
- KOG0424 (11 sites) Ubiquitin-protein ligase
- KOG0425 (2 sites) Ubiquitin-protein ligase
- KOG0434 (38 sites) Isoleucyl-tRNA synthetase
- KOG0437 (35 sites) Leucyl-tRNA synthetase
- KOG0442 (10 sites) Structure-specific endonuclease ERCC1-XPF, catalytic component XPF/ERCC4
- KOG0458 (15 sites) Elongation factor 1 alpha
- KOG0459 (29 sites) Polypeptide release factor 3
- KOG0468 (52 sites) U5 snRNP-specific protein
- KOG0477 (43 sites) DNA replication licensing factor, MCM2 component
- KOG0478 (34 sites) DNA replication licensing factor, MCM4 component
- KOG0481 (42 sites) DNA replication licensing factor, MCM5 component
- KOG0495 (41 sites) HAT repeat protein
- KOG0525 (29 sites) Branched chain alpha-keto acid dehydrogenase E1, beta subunit
- KOG0558 (7 sites) Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit)
- KOG0559 (26 sites) Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit)
- KOG0643 (22 sites) Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1)
- KOG0652 (35 sites) 26S proteasome regulatory complex, ATPase RPT5
- KOG0670 (8 sites) U4/U6-associated splicing factor PRP4
- KOG0672 (7 sites) Halotolerance protein HAL3 (contains flavoprotein domain)
- KOG0673 (22 sites) Thymidylate synthase
- KOG0688 (23 sites) Peptide chain release factor 1 (eRF1)
- KOG0706 (9 sites) Predicted GTPase-activating protein
- KOG0711 (20 sites) Polyprenyl synthetase
- KOG0726 (26 sites) 26S proteasome regulatory complex, ATPase RPT2
- KOG0728 (25 sites) 26S proteasome regulatory complex, ATPase RPT6
- KOG0729 (31 sites) 26S proteasome regulatory complex, ATPase RPT1
- KOG0733 (19 sites) Nuclear AAA ATPase (VCP subfamily)
- KOG0746 (21 sites) 60S ribosomal protein L3 and related proteins
- KOG0760 (13 sites) Mitochondrial carrier protein MRS3/4
- KOG0772 (23 sites) Uncharacterized conserved protein, contains WD40 repeat
- KOG0781 (21 sites) Signal recognition particle receptor, alpha subunit
- KOG0803 (2 sites) Predicted E3 ubiquitin ligase
- KOG0820 (21 sites) Ribosomal RNA adenine dimethylase
- KOG0822 (25 sites) Protein kinase inhibitor
- KOG0862 (1 site) Synaptobrevin/VAMP-like protein SEC22
- KOG0882 (46 sites) Cyclophilin-related peptidyl-prolyl cis-trans isomerase
- KOG0883 (22 sites) Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase
- KOG0885 (14 sites) Peptidyl-prolyl cis-trans isomerase
- KOG0890 (7 sites) Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination
- KOG0900 (5 sites) 40S ribosomal protein S20
- KOG0911 (9 sites) Glutaredoxin-related protein
- KOG0924 (23 sites) mRNA splicing factor ATP-dependent RNA helicase
- KOG0926 (50 sites) DEAH-box RNA helicase
- KOG0939 (18 sites) E3 ubiquitin-protein ligase/Putative upstream regulatory element binding protein
- KOG0953 (10 sites) Mitochondrial RNA helicase SUV3, DEAD-box superfamily
- KOG0962 (5 sites) DNA repair protein RAD50, ABC-type ATPase/SMC superfamily
- KOG0964 (77 sites) Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3)
- KOG0967 (38 sites) ATP-dependent DNA ligase I
- KOG0969 (72 sites) DNA polymerase delta, catalytic subunit
- KOG0979 (25 sites) Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily
- KOG0981 (25 sites) DNA topoisomerase I
- KOG0985 (72 sites) Vesicle coat protein clathrin, heavy chain
- KOG0997 (16 sites) Uncharacterized conserved protein Sand
- KOG1004 (9 sites) Exosomal 3'-5' exoribonuclease complex subunit Rrp40
- KOG1007 (3 sites) WD repeat protein TSSC1, WD repeat superfamily
- KOG1035 (3 sites) eIF-2alpha kinase GCN2
- KOG1038 (28 sites) Mitochondrial/chloroplast DNA-directed RNA polymerase RPO41, provides primers for DNA replication-initiation
- KOG1058 (49 sites) Vesicle coat complex COPI, beta subunit
- KOG1059 (5 sites) Vesicle coat complex AP-3, delta subunit
- KOG1060 (8 sites) Vesicle coat complex AP-3, beta subunit
- KOG1073 (4 sites) Uncharacterized mRNA-associated protein RAP55
- KOG1078 (37 sites) Vesicle coat complex COPI, gamma subunit
- KOG1080 (6 sites) Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases
- KOG1105 (10 sites) Transcription elongation factor TFIIS/Cofactor of enhancer-binding protein Sp1
- KOG1122 (31 sites) tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2)
- KOG1128 (26 sites) Uncharacterized conserved protein, contains TPR repeats
- KOG1147 (26 sites) Glutamyl-tRNA synthetase
- KOG1242 (16 sites) Protein containing adaptin N-terminal region
- KOG1272 (23 sites) WD40-repeat-containing subunit of the 18S rRNA processing complex
- KOG1274 (15 sites) WD40 repeat protein
- KOG1297 (8 sites) Uncharacterized conserved protein
- KOG1302 (27 sites) Vacuolar sorting protein VPS33/slp1 (Sec1 family)
- KOG1349 (20 sites) Gpi-anchor transamidase
- KOG1352 (47 sites) Vacuolar H+-ATPase V1 sector, subunit A
- KOG1355 (21 sites) Adenylosuccinate synthase
- KOG1370 (27 sites) S-adenosylhomocysteine hydrolase
- KOG1373 (28 sites) Transport protein Sec61, alpha subunit
- KOG1374 (31 sites) Gamma tubulin
- KOG1380 (13 sites) Heme A farnesyltransferase
- KOG1381 (19 sites) Para-hydroxybenzoate-polyprenyl transferase
- KOG1396 (5 sites) Uncharacterized conserved protein
- KOG1439 (31 sites) RAB proteins geranylgeranyltransferase component A (RAB escort protein)
- KOG1465 (17 sites) Translation initiation factor 2B, beta subunit (eIF-2Bbeta/GCD7)
- KOG1490 (34 sites) GTP-binding protein CRFG/NOG1 (ODN superfamily)
- KOG1507 (17 sites) Nucleosome assembly protein NAP-1
- KOG1514 (17 sites) Origin recognition complex, subunit 1, and related proteins
- KOG1522 (8 sites) RNA polymerase II, subunit POLR2C/RPB3
- KOG1532 (18 sites) GTPase XAB1, interacts with DNA repair protein XPA
- KOG1533 (10 sites) Predicted GTPase
- KOG1548 (7 sites) Transcription elongation factor TAT-SF1
- KOG1586 (15 sites) Protein required for fusion of vesicles in vesicular transport, alpha-SNAP
- KOG1614 (10 sites) Exosomal 3'-5' exoribonuclease complex, subunit Rrp45
- KOG1625 (13 sites) DNA polymerase alpha-primase complex, polymerase-associated subunit B
- KOG1627 (8 sites) Translation elongation factor EF-1 gamma
- KOG1643 (9 sites) Triosephosphate isomerase
- KOG1644 (8 sites) U2-associated snRNP A' protein
- KOG1646 (15 sites) 40S ribosomal protein S6
- KOG1652 (6 sites) Mitochondrial import inner membrane translocase, subunit TIM17
- KOG1655 (14 sites) Protein involved in vacuolar protein sorting
- KOG1664 (10 sites) Vacuolar H+-ATPase V1 sector, subunit E
- KOG1678 (13 sites) 60s ribosomal protein L15
- KOG1679 (9 sites) Enoyl-CoA hydratase
- KOG1684 (20 sites) Enoyl-CoA hydratase
- KOG1692 (4 sites) Putative cargo transport protein EMP24 (p24 protein family)
- KOG1696 (11 sites) 60s ribosomal protein L19
- KOG1714 (12 sites) 60s ribosomal protein L18
- KOG1728 (9 sites) 40S ribosomal protein S11
- KOG1730 (8 sites) Thioredoxin-like protein
- KOG1763 (23 sites) Uncharacterized conserved protein, contains CCCH-type Zn-finger
- KOG1779 (6 sites) 40s ribosomal protein S27
- KOG1781 (4 sites) Small Nuclear ribonucleoprotein splicing factor
- KOG1793 (19 sites) Uncharacterized conserved protein
- KOG1798 (73 sites) DNA polymerase epsilon, catalytic subunit A
- KOG1806 (21 sites) DEAD box containing helicases
- KOG1820 (35 sites) Microtubule-associated protein
- KOG1872 (30 sites) Ubiquitin-specific protease
- KOG1874 (37 sites) KEKE-like motif-containing transcription regulator (Rlr1)/suppressor of sin4
- KOG1888 (8 sites) Putative phosphoinositide phosphatase
- KOG1896 (28 sites) mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit)
- KOG1898 (35 sites) Splicing factor 3b, subunit 3
- KOG1915 (40 sites) Cell cycle control protein (crooked neck)
- KOG1943 (12 sites) Beta-tubulin folding cofactor D
- KOG1961 (31 sites) Vacuolar sorting protein VPS52/suppressor of actin Sac2
- KOG1969 (15 sites) DNA replication checkpoint protein CHL12/CTF18
- KOG1975 (13 sites) mRNA cap methyltransferase
- KOG1984 (32 sites) Vesicle coat complex COPII, subunit SFB3
- KOG1985 (46 sites) Vesicle coat complex COPII, subunit SEC24/subunit SFB2
- KOG1996 (3 sites) mRNA splicing factor
- KOG2001 (24 sites) Gamma-tubulin complex, DGRIP84/SPC97 component
- KOG2002 (18 sites) TPR-containing nuclear phosphoprotein that regulates K(+) uptake
- KOG2005 (55 sites) 26S proteasome regulatory complex, subunit RPN1/PSMD2
- KOG2007 (24 sites) Cysteinyl-tRNA synthetase
- KOG2015 (21 sites) NEDD8-activating complex, catalytic component UBA3
- KOG2017 (16 sites) Molybdopterin synthase sulfurylase
- KOG2023 (45 sites) Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily)
- KOG2030 (26 sites) Predicted RNA-binding protein
- KOG2036 (58 sites) Predicted P-loop ATPase fused to an acetyltransferase
- KOG2042 (38 sites) Ubiquitin fusion degradation protein-2
- KOG2048 (1 site) WD40 repeat protein
- KOG2050 (25 sites) Puf family RNA-binding protein
- KOG2051 (2 sites) Nonsense-mediated mRNA decay 2 protein
- KOG2062 (48 sites) 26S proteasome regulatory complex, subunit RPN2/PSMD1
- KOG2067 (14 sites) Mitochondrial processing peptidase, alpha subunit
- KOG2068 (9 sites) MOT2 transcription factor
- KOG2072 (23 sites) Translation initiation factor 3, subunit a (eIF-3a)
- KOG2086 (12 sites) Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion
- KOG2090 (37 sites) Metalloendopeptidase family - mitochondrial intermediate peptidase
- KOG2140 (21 sites) Uncharacterized conserved protein
- KOG2141 (11 sites) Protein involved in high osmolarity signaling pathway
- KOG2145 (22 sites) Cytoplasmic tryptophanyl-tRNA synthetase
- KOG2146 (6 sites) Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain)
- KOG2159 (21 sites) tRNA nucleotidyltransferase/poly(A) polymerase
- KOG2180 (41 sites) Late Golgi protein sorting complex, subunit Vps53
- KOG2217 (4 sites) U4/U6.U5 snRNP associated protein
- KOG2241 (13 sites) tRNA-binding protein
- KOG2270 (10 sites) Serine/threonine protein kinase involved in cell cycle control
- KOG2295 (12 sites) C2H2 Zn-finger protein
- KOG2298 (33 sites) Glycyl-tRNA synthetase and related class II tRNA synthetase
- KOG2299 (19 sites) Ribonuclease HI
- KOG2310 (21 sites) DNA repair exonuclease MRE11
- KOG2311 (39 sites) NAD/FAD-utilizing protein possibly involved in translation
- KOG2315 (18 sites) Predicted translation initiation factor related to eIF-3a
- KOG2316 (10 sites) Predicted ATPase (PP-loop superfamily)
- KOG2318 (23 sites) Uncharacterized conserved protein
- KOG2321 (25 sites) WD40 repeat protein
- KOG2340 (23 sites) Uncharacterized conserved protein
- KOG2370 (13 sites) Cactin
- KOG2379 (17 sites) Endonuclease MUS81
- KOG2385 (9 sites) Uncharacterized conserved protein
- KOG2387 (35 sites) CTP synthase (UTP-ammonia lyase)
- KOG2388 (3 sites) UDP-N-acetylglucosamine pyrophosphorylase
- KOG2391 (12 sites) Vacuolar sorting protein/ubiquitin receptor VPS23
- KOG2396 (26 sites) HAT (Half-A-TPR) repeat-containing protein
- KOG2409 (21 sites) KRR1-interacting protein involved in 40S ribosome biogenesis
- KOG2420 (14 sites) Phosphatidylserine decarboxylase
- KOG2422 (31 sites) Uncharacterized conserved protein
- KOG2423 (23 sites) Nucleolar GTPase
- KOG2434 (9 sites) RNA polymerase I transcription factor
- KOG2439 (10 sites) Nuclear architecture related protein
- KOG2441 (16 sites) mRNA splicing factor/probable chromatin binding snw family nuclear protein
- KOG2460 (4 sites) Signal recognition particle, subunit Srp68
- KOG2477 (20 sites) Uncharacterized conserved protein
- KOG2485 (2 sites) Conserved ATP/GTP binding protein
- KOG2487 (10 sites) RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4
- KOG2489 (20 sites) Transmembrane protein
- KOG2498 (6 sites) IK cytokine down-regulator of HLA class II
- KOG2518 (19 sites) 5'-3' exonuclease
- KOG2519 (34 sites) 5'-3' exonuclease
- KOG2535 (26 sites) RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase
- KOG2540 (20 sites) Cytochrome oxidase assembly factor COX11
- KOG2545 (10 sites) Conserved membrane protein
- KOG2550 (30 sites) IMP dehydrogenase/GMP reductase
- KOG2553 (14 sites) Pseudouridylate synthase
- KOG2554 (12 sites) Pseudouridylate synthase
- KOG2572 (22 sites) Ribosome biogenesis protein - Nop58p/Nop5p
- KOG2580 (8 sites) Mitochondrial import inner membrane translocase, subunit TIM44
- KOG2581 (25 sites) 26S proteasome regulatory complex, subunit RPN3/PSMD3
- KOG2600 (19 sites) U3 small nucleolar ribonucleoprotein (snoRNP) subunit - Mpp10p
- KOG2627 (11 sites) Nuclear protein ES2
- KOG2628 (2 sites) Farnesyl cysteine-carboxyl methyltransferase
- KOG2654 (10 sites) Uncharacterized conserved protein
- KOG2671 (24 sites) Putative RNA methylase
- KOG2675 (3 sites) Adenylate cyclase-associated protein (CAP/Srv2p)
- KOG2691 (6 sites) RNA polymerase II subunit 9
- KOG2708 (17 sites) Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold)
- KOG2730 (2 sites) Methylase
- KOG2734 (15 sites) Uncharacterized conserved protein
- KOG2738 (29 sites) Putative methionine aminopeptidase
- KOG2749 (20 sites) mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1
- KOG2758 (14 sites) Translation initiation factor 3, subunit e (eIF-3e)
- KOG2760 (7 sites) Vacuolar sorting protein VPS36
- KOG2767 (8 sites) Translation initiation factor 5 (eIF-5)
- KOG2768 (8 sites) Translation initiation factor 2, beta subunit (eIF-2beta)
- KOG2770 (18 sites) Aminomethyl transferase
- KOG2776 (18 sites) Metallopeptidase
- KOG2779 (21 sites) N-myristoyl transferase
- KOG2788 (14 sites) Glycosyltransferase
- KOG2792 (14 sites) Putative cytochrome C oxidase assembly protein
- KOG2830 (9 sites) Protein phosphatase 2A-associated protein
- KOG2832 (16 sites) TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation)
- KOG2840 (14 sites) Uncharacterized conserved protein with similarity to predicted ATPase of the PP-loop superfamily
- KOG2851 (13 sites) Eukaryotic-type DNA primase, catalytic (small) subunit
- KOG2863 (11 sites) RNA lariat debranching enzyme
- KOG2868 (8 sites) Decapping enzyme complex component DCP1
- KOG2869 (31 sites) Meiotic cell division protein Pelota/DOM34
- KOG2874 (25 sites) rRNA processing protein
- KOG2887 (7 sites) Membrane protein involved in ER to Golgi transport
- KOG2888 (7 sites) Putative RNA binding protein
- KOG2893 (7 sites) Zn finger protein
- KOG2894 (15 sites) Uncharacterized conserved protein XAP-5
- KOG2908 (21 sites) 26S proteasome regulatory complex, subunit RPN9/PSMD13
- KOG2909 (16 sites) Vacuolar H+-ATPase V1 sector, subunit C
- KOG2912 (12 sites) Predicted DNA methylase
- KOG2915 (14 sites) tRNA(1-methyladenosine) methyltransferase, subunit GCD14
- KOG2916 (23 sites) Translation initiation factor 2, alpha subunit (eIF-2alpha)
- KOG2920 (7 sites) Predicted methyltransferase
- KOG2923 (1 site) Uncharacterized conserved protein
- KOG2927 (15 sites) Membrane component of ER protein translocation complex
- KOG2928 (7 sites) Origin recognition complex, subunit 2
- KOG2937 (14 sites) Decapping enzyme complex, predicted pyrophosphatase DCP2
- KOG2948 (26 sites) Predicted metal-binding protein
- KOG2957 (23 sites) Vacuolar H+-ATPase V0 sector, subunit d
- KOG2963 (11 sites) RNA-binding protein required for 60S ribosomal subunit biogenesis
- KOG2978 (10 sites) Dolichol-phosphate mannosyltransferase
- KOG2983 (6 sites) Uncharacterized conserved protein
- KOG2990 (8 sites) C2C2-type Zn-finger protein
- KOG2994 (21 sites) Uracil DNA glycosylase
- KOG3003 (11 sites) Molecular chaperone of the GrpE family
- KOG3013 (12 sites) Exosomal 3'-5' exoribonuclease complex, subunit Rrp4
- KOG3026 (9 sites) Splicing factor SPF30
- KOG3034 (3 sites) Isoamyl acetate-hydrolyzing esterase and related enzymes
- KOG3036 (15 sites) Protein involved in cell differentiation/sexual development
- KOG3052 (19 sites) Cytochrome c1
- KOG3063 (10 sites) Membrane coat complex Retromer, subunit VPS26
- KOG3064 (17 sites) RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger
- KOG3068 (11 sites) mRNA splicing factor
- KOG3096 (6 sites) Spliceosome-associated coiled-coil protein
- KOG3102 (1 site) Uncharacterized conserved protein
- KOG3104 (9 sites) Mod5 protein sorting/negative effector of RNA Pol III synthesis
- KOG3110 (9 sites) Riboflavin kinase
- KOG3113 (10 sites) Uncharacterized conserved protein
- KOG3123 (11 sites) Diphthine synthase
- KOG3129 (6 sites) 26S proteasome regulatory complex, subunit PSMD9
- KOG3152 (8 sites) TBP-binding protein, activator of basal transcription (contains rrm motif)
- KOG3153 (1 site) Thiamine pyrophosphokinase
- KOG3154 (11 sites) Uncharacterized conserved protein
- KOG3163 (18 sites) Uncharacterized conserved protein related to ribosomal protein S8E
- KOG3165 (7 sites) Predicted nucleic-acid-binding protein, contains PIN domain
- KOG3169 (3 sites) RNA polymerase II transcriptional regulation mediator
- KOG3170 (8 sites) Conserved phosducin-like protein
- KOG3172 (4 sites) Small nuclear ribonucleoprotein Sm D3
- KOG3181 (14 sites) 40S ribosomal protein S3
- KOG3198 (4 sites) Signal recognition particle, subunit Srp19
- KOG3206 (14 sites) Alpha-tubulin folding cofactor B
- KOG3214 (4 sites) Uncharacterized Zn ribbon-containing protein
- KOG3220 (14 sites) Similar to bacterial dephospho-CoA kinase
- KOG3230 (16 sites) Vacuolar assembly/sorting protein DID4
- KOG3252 (9 sites) Uncharacterized conserved protein
- KOG3262 (7 sites) H/ACA small nucleolar RNP component GAR1
- KOG3265 (6 sites) Histone chaperone involved in gene silencing
- KOG3273 (15 sites) Predicted RNA-binding protein Pno1p interacting with Nob1p and involved in 26S proteasome assembly
- KOG3277 (4 sites) Uncharacterized conserved protein
- KOG3283 (15 sites) 40S ribosomal protein S8
- KOG3294 (4 sites) WW domain binding protein WBP-2, contains GRAM domain
- KOG3296 (10 sites) Translocase of outer mitochondrial membrane complex, subunit TOM40
- KOG3297 (6 sites) DNA-directed RNA polymerase subunit E'
- KOG3298 (6 sites) DNA-directed RNA polymerase subunit E'
- KOG3301 (11 sites) Ribosomal protein S4
- KOG3302 (10 sites) TATA-box binding protein (TBP), component of TFIID and TFIIIB
- KOG3311 (9 sites) Ribosomal protein S18
- KOG3316 (2 sites) Transport protein particle (TRAPP) complex subunit
- KOG3325 (9 sites) Membrane coat complex Retromer, subunit VPS29/PEP11
- KOG3330 (4 sites) Transport protein particle (TRAPP) complex subunit
- KOG3335 (10 sites) Predicted coiled-coil protein
- KOG3339 (3 sites) Predicted glycosyltransferase
- KOG3342 (10 sites) Signal peptidase I
- KOG3373 (7 sites) Glycine cleavage system H protein (lipoate-binding)
- KOG3381 (4 sites) Uncharacterized conserved protein
- KOG3387 (8 sites) 60S ribosomal protein 15.5kD/SNU13, NHP2/L7A family (includes ribonuclease P subunit p38), involved in splicing
- KOG3401 (4 sites) 60S ribosomal protein L26
- KOG3405 (5 sites) RNA polymerase subunit K
- KOG3411 (8 sites) 40S ribosomal protein S19
- KOG3418 (7 sites) 60S ribosomal protein L27
- KOG3432 (7 sites) Vacuolar H+-ATPase V1 sector, subunit F
- KOG3452 (4 sites) 60S ribosomal protein L36
- KOG3453 (7 sites) Cytochrome c
- KOG3460 (2 sites) Small nuclear ribonucleoprotein (snRNP) LSM3
- KOG3471 (22 sites) RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB2
- KOG3475 (9 sites) 60S ribosomal protein L37
- KOG3478 (4 sites) Prefoldin subunit 6, KE2 family
- KOG3482 (3 sites) Small nuclear ribonucleoprotein (snRNP) SMF
- KOG3487 (4 sites) TRAPP 20 K subunit
- KOG3566 (1 site) Glycosylphosphatidylinositol anchor attachment protein GAA1
- KOG3677 (17 sites) RNA polymerase I-associated factor - PAF67
- KOG3786 (19 sites) RNA polymerase II assessory factor Cdc73p
- KOG3800 (3 sites) Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor
- KOG3818 (13 sites) DNA polymerase epsilon, subunit B
- KOG3871 (18 sites) Cell adhesion complex protein bystin
- KOG3911 (1 site) Nucleolar protein NOP52/RRP1
- KOG3974 (19 sites) Predicted sugar kinase
- KOG4011 (2 sites) Transcription initiation factor TFIID, subunit TAF7
- KOG4098 (9 sites) Molecular chaperone Prefoldin, subunit 2
- KOG4392 (6 sites) RNA polymerase, subunit L
- KOG4426 (22 sites) Arginyl-tRNA synthetase
- KOG4442 (10 sites) Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis
- KOG4642 (6 sites) Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats)
- KOG4727 (7 sites) U1-like Zn-finger protein
- KOG4759 (9 sites) Ribosome recycling factor