#| ca.umontreal.iro.evolution.introns.WriteIntronTable Sun Sep 23 11:29:26 CEST 2007 #| System: Mac OS X 10.4.10 i386 #| Java: Java HotSpot(TM) Client VM 1.5.0_07-87 (1.5.0_07-164) mixed mode, "Apple Computer, Inc." #| Current directory: /Users/csuros/Work/introns/larger-data/denovo/all-KOGs/Chromo/HTML/aligned #| Arguments: #| Input alignment: KOG0050.faa #| Intron position list parenthesis: {i .. i} #| Intron positions are relative to: sequence intron1 0,100,200 intron2 0,80,160 intron3 0,50,100 Ptet gi|124423860|emb|CAK88653.1| -1 128 128 intron3 Ptet gi|124423860|emb|CAK88653.1| -1 512 512 intron2 Ptet gi|124423860|emb|CAK88653.1| -1 528 528 intron3 Tpar gi|71033877|ref|XP_766580.1| -1 49 49 intron2 Tpar gi|71033877|ref|XP_766580.1| -1 111 111 intron3 Tpar gi|71033877|ref|XP_766580.1| -1 236 236 intron2 Tpar gi|71033877|ref|XP_766580.1| -1 300 300 intron3 Tpar gi|71033877|ref|XP_766580.1| -1 348 348 intron3 Tpar gi|71033877|ref|XP_766580.1| -1 377 377 intron3 Tpar gi|71033877|ref|XP_766580.1| -1 415 415 intron2 Tpar gi|71033877|ref|XP_766580.1| -1 558 558 intron3 Tpar gi|71033877|ref|XP_766580.1| -1 584 584 intron2 Tann gi|84997990|ref|XP_953716.1| -1 49 49 intron2 Tann gi|84997990|ref|XP_953716.1| -1 111 111 intron3 Tann gi|84997990|ref|XP_953716.1| -1 236 236 intron2 Tann gi|84997990|ref|XP_953716.1| -1 300 300 intron3 Tann gi|84997990|ref|XP_953716.1| -1 348 348 intron3 Tann gi|84997990|ref|XP_953716.1| -1 377 377 intron3 Tann gi|84997990|ref|XP_953716.1| -1 415 415 intron2 Tann gi|84997990|ref|XP_953716.1| -1 558 558 intron3 Tann gi|84997990|ref|XP_953716.1| -1 584 584 intron2 Tann gi|84997990|ref|XP_953716.1| -1 657 657 intron1 Pber gi|68076175|ref|XP_680007.1| -1 528 528 intron3 Pber gi|68076175|ref|XP_680007.1| -1 782 782 intron3 Rory lcl|RO3G_03369 -1 59 59 intron3 Rory lcl|RO3G_03369 -1 211 211 intron2 Rory lcl|RO3G_03369 -1 616 616 intron3 Rory lcl|RO3G_03369 -1 642 642 intron2 Ccin lcl|CC1G_11763 -1 9 9 intron1 Ccin lcl|CC1G_11763 -1 12 12 intron3 Ccin lcl|CC1G_11763 -1 31 31 intron2 Ccin lcl|CC1G_11763 -1 65 65 intron3 Ccin lcl|CC1G_11763 -1 158 158 intron1 Ccin lcl|CC1G_11763 -1 207 207 intron2 Ccin lcl|CC1G_11763 -1 218 218 intron3 Ccin lcl|CC1G_11763 -1 369 369 intron1 Pchr gnl|Phchr1|132806 -1 1 1 intron3 Pchr gnl|Phchr1|132806 -1 9 9 intron1 Pchr gnl|Phchr1|132806 -1 12 12 intron3 Pchr gnl|Phchr1|132806 -1 31 31 intron2 Pchr gnl|Phchr1|132806 -1 65 65 intron3 Pchr gnl|Phchr1|132806 -1 158 158 intron1 Pchr gnl|Phchr1|132806 -1 218 218 intron3 Pchr gnl|Phchr1|132806 -1 371 371 intron1 Pchr gnl|Phchr1|132806 -1 825 825 intron3 Crei gnl|Chlre3|129649 -1 14 14 intron3 Crei gnl|Chlre3|129649 -1 49 49 intron2 Crei gnl|Chlre3|129649 -1 105 105 intron3 Crei gnl|Chlre3|129649 -1 162 162 intron2 Crei gnl|Chlre3|129649 -1 220 220 intron3 Crei gnl|Chlre3|129649 -1 238 238 intron3 Crei gnl|Chlre3|129649 -1 303 303 intron3 Crei gnl|Chlre3|129649 -1 382 382 intron3 Crei gnl|Chlre3|129649 -1 563 563 intron3 Crei gnl|Chlre3|129649 -1 625 625 intron2 Crei gnl|Chlre3|129649 -1 662 662 intron3 Crei gnl|Chlre3|129649 -1 716 716 intron3 Tcas gi|91091782|ref|XP_969684.1| -1 148 148 intron1 Tcas gi|91091782|ref|XP_969684.1| -1 377 377 intron1 Tcas gi|91091782|ref|XP_969684.1| -1 745 745 intron3 Amel gi|66530332|ref|XP_624906.1| -1 15 15 intron3 Amel gi|66530332|ref|XP_624906.1| -1 104 104 intron2 Amel gi|66530332|ref|XP_624906.1| -1 148 148 intron1 Amel gi|66530332|ref|XP_624906.1| -1 315 315 intron3 Amel gi|66530332|ref|XP_624906.1| -1 375 375 intron1 Amel gi|66530332|ref|XP_624906.1| -1 520 520 intron1 Amel gi|66530332|ref|XP_624906.1| -1 559 559 intron3 Amel gi|66530332|ref|XP_624906.1| -1 614 614 intron3 Amel gi|66530332|ref|XP_624906.1| -1 650 650 intron3 Amel gi|66530332|ref|XP_624906.1| -1 708 708 intron3 Ptri gnl|Poptr1_1|571093 -1 59 59 intron3 Ptri gnl|Poptr1_1|571093 -1 632 632 intron3 Ptri gnl|Poptr1_1|571093 -1 726 726 intron3 Ptri gnl|Poptr1_1|571093 -1 841 841 intron2 Osat gi|115457842|ref|NP_001052521.1| -1 59 59 intron3 Osat gi|115457842|ref|NP_001052521.1| -1 633 633 intron3 Osat gi|115457842|ref|NP_001052521.1| -1 727 727 intron3 Atha gi|15218276|ref|NP_172448.1| -1 59 59 intron3 Atha gi|15218276|ref|NP_172448.1| -1 632 632 intron3 Atha gi|15218276|ref|NP_172448.1| -1 726 726 intron3 Pbla gnl|Phybl1|75310 -1 59 59 intron3 Pbla gnl|Phybl1|75310 -1 211 211 intron2 Pbla gnl|Phybl1|75310 -1 382 382 intron1 Pbla gnl|Phybl1|75310 -1 614 614 intron1 Otau gi|116057599|emb|CAL53802.1| -1 14 14 intron2 Hsap gi|11067747|ref|NP_001244.1| -1 15 15 intron3 Hsap gi|11067747|ref|NP_001244.1| -1 50 50 intron2 Hsap gi|11067747|ref|NP_001244.1| -1 104 104 intron2 Hsap gi|11067747|ref|NP_001244.1| -1 147 147 intron1 Hsap gi|11067747|ref|NP_001244.1| -1 180 180 intron2 Hsap gi|11067747|ref|NP_001244.1| -1 253 253 intron2 Hsap gi|11067747|ref|NP_001244.1| -1 301 301 intron3 Hsap gi|11067747|ref|NP_001244.1| -1 364 364 intron3 Hsap gi|11067747|ref|NP_001244.1| -1 414 414 intron2 Hsap gi|11067747|ref|NP_001244.1| -1 468 468 intron3 Hsap gi|11067747|ref|NP_001244.1| -1 523 523 intron3 Hsap gi|11067747|ref|NP_001244.1| -1 550 550 intron3 Hsap gi|11067747|ref|NP_001244.1| -1 631 631 intron3 Hsap gi|11067747|ref|NP_001244.1| -1 697 697 intron3 Hsap gi|11067747|ref|NP_001244.1| -1 768 768 intron3