#| ca.umontreal.iro.evolution.introns.WriteIntronTable Tue Apr 12 01:40:47 EDT 2011 #| System: Mac OS X 10.6.7 x86_64 #| Java: Java HotSpot(TM) 64-Bit Server VM 19.1-b02-334 (1.6.0_24-b07-334-10M3326) mixed mode, Apple Inc. #| Current directory: /Users/csuros/Work/introns/larger-data/denovo/census2010/pipeline/3MCMC/HTML #| Arguments: #| Input alignment: alignments/KOG0394.faa #| Intron position list parenthesis: {i .. i} #| Intron positions are relative to: sequence intron1 0,100,200 intron2 0,80,160 intron3 0,50,100 Pbla gnl|Phybl1|17966 -1 18 18 intron3 Pbla gnl|Phybl1|17966 -1 24 24 intron3 Pbla gnl|Phybl1|17966 -1 39 39 intron1 Pbla gnl|Phybl1|17966 -1 98 98 intron1 Mcir gnl|Mucci2|187120 -1 24 24 intron3 Mcir gnl|Mucci2|187120 -1 39 39 intron1 Mcir gnl|Mucci2|187120 -1 98 98 intron1 Ftri gi|219127632|ref|XP_002184036.1| -1 18 18 intron2 Ftri gi|219127632|ref|XP_002184036.1| -1 142 142 intron3 Fcyl gnl|Fracy1|162382 -1 140 140 intron3 Tpse gi|224005987|ref|XP_002291954.1| -1 14 14 intron2 Tthe gi|229595003|ref|XP_001032971.3| -1 19 19 intron2 Tthe gi|229595003|ref|XP_001032971.3| -1 28 28 intron2 Tthe gi|229595003|ref|XP_001032971.3| -1 61 61 intron3 Tthe gi|229595003|ref|XP_001032971.3| -1 95 95 intron3 Tthe gi|229595003|ref|XP_001032971.3| -1 184 184 intron2 Ptet gi|145487394|ref|XP_001429702.1| -1 18 18 intron2 Ptet gi|145487394|ref|XP_001429702.1| -1 60 60 intron3 Ptet gi|145487394|ref|XP_001429702.1| -1 183 183 intron2 Bbov gi|156087801|ref|XP_001611307.1| -1 35 35 intron2 Bbov gi|156087801|ref|XP_001611307.1| -1 58 58 intron1 Bbov gi|156087801|ref|XP_001611307.1| -1 77 77 intron3 Bbov gi|156087801|ref|XP_001611307.1| -1 173 173 intron2 Tann gi|85001291|ref|XP_955364.1| -1 17 17 intron2 Tann gi|85001291|ref|XP_955364.1| -1 40 40 intron1 Tann gi|85001291|ref|XP_955364.1| -1 59 59 intron3 Tann gi|85001291|ref|XP_955364.1| -1 155 155 intron2 Tpar gi|71026212|ref|XP_762790.1| -1 17 17 intron1 Tpar gi|71026212|ref|XP_762790.1| -1 36 36 intron3 Tpar gi|71026212|ref|XP_762790.1| -1 132 132 intron2 Aano gnl|Auran1|39255 -1 25 25 intron3 Aano gnl|Auran1|39255 -1 42 42 intron1 Tgon gi|237835873|ref|XP_002367234.1| -1 157 157 intron3 Tgon gi|237835873|ref|XP_002367234.1| -1 205 205 intron3 Tgon gi|237835873|ref|XP_002367234.1| -1 222 222 intron3 Tgon gi|237835873|ref|XP_002367234.1| -1 240 240 intron2 Tgon gi|237835873|ref|XP_002367234.1| -1 263 263 intron1 Tgon gi|237835873|ref|XP_002367234.1| -1 288 288 intron1 Tgon gi|237835873|ref|XP_002367234.1| -1 331 331 intron3 Tgon gi|237835873|ref|XP_002367234.1| -1 352 352 intron1 Tgon gi|237835873|ref|XP_002367234.1| -1 407 407 intron2 Pfal gi|124506617|ref|XP_001351906.1| -1 33 33 intron3 Pfal gi|124506617|ref|XP_001351906.1| -1 82 82 intron3 Pfal gi|124506617|ref|XP_001351906.1| -1 107 107 intron3 Pfal gi|124506617|ref|XP_001351906.1| -1 157 157 intron2 Pyoe gi|83273968|ref|XP_729630.1| -1 32 32 intron1 Pyoe gi|83273968|ref|XP_729630.1| -1 51 51 intron3 Pyoe gi|83273968|ref|XP_729630.1| -1 112 112 intron3 Pyoe gi|83273968|ref|XP_729630.1| -1 137 137 intron3 Pyoe gi|83273968|ref|XP_729630.1| -1 187 187 intron2 Pyoe gi|83273968|ref|XP_729630.1| -1 209 209 intron1 Pviv gi|156097076|ref|XP_001614571.1| -1 18 18 intron2 Pviv gi|156097076|ref|XP_001614571.1| -1 41 41 intron1 Pviv gi|156097076|ref|XP_001614571.1| -1 60 60 intron3 Pviv gi|156097076|ref|XP_001614571.1| -1 109 109 intron3 Pviv gi|156097076|ref|XP_001614571.1| -1 134 134 intron3 Pviv gi|156097076|ref|XP_001614571.1| -1 184 184 intron2 Pcap gnl|PhycaF7|107334 -1 42 42 intron3 Pcap gnl|PhycaF7|107334 -1 59 59 intron3 Pcap gnl|PhycaF7|107334 -1 94 94 intron2 Pram gnl|Phyra1_1|71594 -1 18 18 intron2 Pram gnl|Phyra1_1|71594 -1 94 94 intron3 Pram gnl|Phyra1_1|71594 -1 134 134 intron3 Pram gnl|Phyra1_1|71594 -1 151 151 intron3 Pram gnl|Phyra1_1|71594 -1 183 183 intron2 Psoj gnl|Physo1_1|108727 -1 18 18 intron2 Psoj gnl|Physo1_1|108727 -1 94 94 intron3 Psoj gnl|Physo1_1|108727 -1 134 134 intron3 Psoj gnl|Physo1_1|108727 -1 151 151 intron3 Psoj gnl|Physo1_1|108727 -1 186 186 intron2 O809 gnl|OstRCC809_2|91169 -1 5 5 intron3 O809 gnl|OstRCC809_2|91169 -1 18 18 intron2 Otau gnl|Ostta4|17028 -1 13 13 intron2 Oluc gi|145345429|ref|XP_001417213.1| -1 4 4 intron3 Oluc gi|145345429|ref|XP_001417213.1| -1 17 17 intron2 Amac lcl|AMAG_10389T0 -1 20 20 intron2 Amac lcl|AMAG_10389T0 -1 62 62 intron3 Amac lcl|AMAG_10389T0 -1 67 67 intron1 Amac lcl|AMAG_10389T0 -1 137 137 intron3 Spom gi|19113099|ref|NP_596307.1| -1 27 27 intron3 Spom gi|19113099|ref|NP_596307.1| -1 135 135 intron3 Sjap gi|213407064|ref|XP_002174303.1| -1 27 27 intron3 Sjap gi|213407064|ref|XP_002174303.1| -1 135 135 intron3 Atha gi|18399819|ref|NP_565521.1| -1 19 19 intron2 Atha gi|18399819|ref|NP_565521.1| -1 28 28 intron2 Atha gi|18399819|ref|NP_565521.1| -1 61 61 intron3 Atha gi|18399819|ref|NP_565521.1| -1 110 110 intron3 Atha gi|18399819|ref|NP_565521.1| -1 137 137 intron3 Atha gi|18399819|ref|NP_565521.1| -1 188 188 intron2 Sbic gi|242058511|ref|XP_002458401.1| -1 19 19 intron2 Sbic gi|242058511|ref|XP_002458401.1| -1 28 28 intron2 Sbic gi|242058511|ref|XP_002458401.1| -1 61 61 intron3 Sbic gi|242058511|ref|XP_002458401.1| -1 110 110 intron3 Sbic gi|242058511|ref|XP_002458401.1| -1 137 137 intron3 Sbic gi|242058511|ref|XP_002458401.1| -1 186 186 intron2 Osat gi|115439561|ref|NP_001044060.1| -1 19 19 intron2 Osat gi|115439561|ref|NP_001044060.1| -1 28 28 intron2 Osat gi|115439561|ref|NP_001044060.1| -1 61 61 intron3 Osat gi|115439561|ref|NP_001044060.1| -1 110 110 intron3 Osat gi|115439561|ref|NP_001044060.1| -1 137 137 intron3 Osat gi|115439561|ref|NP_001044060.1| -1 186 186 intron2 Crei gi|159465968|ref|XP_001691181.1| -1 18 18 intron2 Crei gi|159465968|ref|XP_001691181.1| -1 60 60 intron3 Crei gi|159465968|ref|XP_001691181.1| -1 109 109 intron3 Crei gi|159465968|ref|XP_001691181.1| -1 136 136 intron3 Crei gi|159465968|ref|XP_001691181.1| -1 185 185 intron2 Smoe gnl|Selmo1|228214 -1 18 18 intron2 Smoe gnl|Selmo1|228214 -1 27 27 intron2 Smoe gnl|Selmo1|228214 -1 60 60 intron3 Smoe gnl|Selmo1|228214 -1 109 109 intron3 Smoe gnl|Selmo1|228214 -1 136 136 intron3 Smoe gnl|Selmo1|228214 -1 185 185 intron2 Ppat gi|168021899|ref|XP_001763478.1| -1 18 18 intron2 Ppat gi|168021899|ref|XP_001763478.1| -1 60 60 intron3 Ppat gi|168021899|ref|XP_001763478.1| -1 109 109 intron3 Ppat gi|168021899|ref|XP_001763478.1| -1 136 136 intron3 Ppat gi|168021899|ref|XP_001763478.1| -1 185 185 intron2 C169 gnl|Coc_C169_1|52108 -1 5 5 intron2 C169 gnl|Coc_C169_1|52108 -1 62 62 intron3 C169 gnl|Coc_C169_1|52108 -1 111 111 intron3 C169 gnl|Coc_C169_1|52108 -1 138 138 intron3 C169 gnl|Coc_C169_1|52108 -1 187 187 intron2 C64A gnl|ChlNC64A_1|35566 -1 18 18 intron2 C64A gnl|ChlNC64A_1|35566 -1 60 60 intron3 C64A gnl|ChlNC64A_1|35566 -1 109 109 intron3 C64A gnl|ChlNC64A_1|35566 -1 160 160 intron3 M299 gi|255075683|ref|XP_002501516.1| -1 18 18 intron2 Mpus gnl|MicpuC2|26148 -1 18 18 intron2 Ehux gnl|Emihu1|351420 -1 140 140 intron2 Prep gi|189199544|ref|XP_001936109.1| -1 10 10 intron3 Prep gi|189199544|ref|XP_001936109.1| -1 28 28 intron3 Prep gi|189199544|ref|XP_001936109.1| -1 60 60 intron3 Prep gi|189199544|ref|XP_001936109.1| -1 120 120 intron3 Prep gi|189199544|ref|XP_001936109.1| -1 135 135 intron3 Prep gi|189199544|ref|XP_001936109.1| -1 170 170 intron1 Chet gnl|CocheC5_1|26171 -1 10 10 intron3 Chet gnl|CocheC5_1|26171 -1 28 28 intron3 Chet gnl|CocheC5_1|26171 -1 60 60 intron3 Chet gnl|CocheC5_1|26171 -1 120 120 intron3 Chet gnl|CocheC5_1|26171 -1 135 135 intron3 Chet gnl|CocheC5_1|26171 -1 170 170 intron1 Pnod gi|169613615|ref|XP_001800224.1| -1 10 10 intron3 Pnod gi|169613615|ref|XP_001800224.1| -1 28 28 intron3 Pnod gi|169613615|ref|XP_001800224.1| -1 60 60 intron3 Pnod gi|169613615|ref|XP_001800224.1| -1 120 120 intron3 Pnod gi|169613615|ref|XP_001800224.1| -1 135 135 intron3 Pnod gi|169613615|ref|XP_001800224.1| -1 170 170 intron1 Mfij gnl|Mycfi1|61188 -1 10 10 intron3 Mfij gnl|Mycfi1|61188 -1 28 28 intron3 Mfij gnl|Mycfi1|61188 -1 170 170 intron1 Mgra gnl|Mycgr3|99493 -1 10 10 intron3 Mgra gnl|Mycgr3|99493 -1 28 28 intron3 Mgra gnl|Mycgr3|99493 -1 170 170 intron1 Cimm gi|119174482|ref|XP_001239602.1| -1 10 10 intron3 Cimm gi|119174482|ref|XP_001239602.1| -1 28 28 intron3 Cimm gi|119174482|ref|XP_001239602.1| -1 60 60 intron3 Cimm gi|119174482|ref|XP_001239602.1| -1 120 120 intron3 Cimm gi|119174482|ref|XP_001239602.1| -1 170 170 intron1 Uree gi|258567250|ref|XP_002584369.1| -1 10 10 intron3 Uree gi|258567250|ref|XP_002584369.1| -1 28 28 intron3 Uree gi|258567250|ref|XP_002584369.1| -1 60 60 intron3 Uree gi|258567250|ref|XP_002584369.1| -1 122 122 intron1 Uree gi|258567250|ref|XP_002584369.1| -1 168 168 intron1 Anid gi|67515615|ref|XP_657693.1| -1 10 10 intron3 Anid gi|67515615|ref|XP_657693.1| -1 28 28 intron3 Anid gi|67515615|ref|XP_657693.1| -1 56 56 intron3 Anid gi|67515615|ref|XP_657693.1| -1 116 116 intron3 Anid gi|67515615|ref|XP_657693.1| -1 166 166 intron1 Bfuc gi|154309394|ref|XP_001554031.1| -1 10 10 intron3 Bfuc gi|154309394|ref|XP_001554031.1| -1 28 28 intron3 Bfuc gi|154309394|ref|XP_001554031.1| -1 60 60 intron3 Bfuc gi|154309394|ref|XP_001554031.1| -1 120 120 intron3 Bfuc gi|154309394|ref|XP_001554031.1| -1 135 135 intron3 Bfuc gi|154309394|ref|XP_001554031.1| -1 170 170 intron1 Sscl gi|156058234|ref|XP_001595040.1| -1 10 10 intron3 Sscl gi|156058234|ref|XP_001595040.1| -1 28 28 intron3 Sscl gi|156058234|ref|XP_001595040.1| -1 60 60 intron3 Sscl gi|156058234|ref|XP_001595040.1| -1 120 120 intron3 Sscl gi|156058234|ref|XP_001595040.1| -1 135 135 intron3 Sscl gi|156058234|ref|XP_001595040.1| -1 170 170 intron1 Gzea gi|46121525|ref|XP_385317.1| -1 10 10 intron3 Gzea gi|46121525|ref|XP_385317.1| -1 28 28 intron3 Gzea gi|46121525|ref|XP_385317.1| -1 60 60 intron3 Gzea gi|46121525|ref|XP_385317.1| -1 120 120 intron3 Gzea gi|46121525|ref|XP_385317.1| -1 135 135 intron3 Gzea gi|46121525|ref|XP_385317.1| -1 170 170 intron1 Mgri gi|145612181|ref|XP_362561.2| -1 4 4 intron3 Mgri gi|145612181|ref|XP_362561.2| -1 36 36 intron3 Mgri gi|145612181|ref|XP_362561.2| -1 96 96 intron3 Mgri gi|145612181|ref|XP_362561.2| -1 111 111 intron3 Mgri gi|145612181|ref|XP_362561.2| -1 146 146 intron1 Ncra gi|85103291|ref|XP_961487.1| -1 10 10 intron3 Ncra gi|85103291|ref|XP_961487.1| -1 28 28 intron3 Ncra gi|85103291|ref|XP_961487.1| -1 60 60 intron3 Ncra gi|85103291|ref|XP_961487.1| -1 135 135 intron3 Bden lcl|BDEG_02121 -1 12 12 intron1 Bden lcl|BDEG_02121 -1 19 19 intron2 Bden lcl|BDEG_02121 -1 61 61 intron3 Bden lcl|BDEG_02121 -1 136 136 intron3 Bden lcl|BDEG_02121 -1 153 153 intron3 Bden lcl|BDEG_02121 -1 187 187 intron2 Mlar gnl|Mellp1|50103 -1 38 38 intron3 Mlar gnl|Mellp1|50103 -1 81 81 intron3 Mlar gnl|Mellp1|50103 -1 130 130 intron3 Mlar gnl|Mellp1|50103 -1 156 156 intron3 Mlar gnl|Mellp1|50103 -1 206 206 intron2 Pgra lcl|PGTG_14043 -1 38 38 intron3 Pgra lcl|PGTG_14043 -1 90 90 intron3 Pgra lcl|PGTG_14043 -1 139 139 intron3 Pgra lcl|PGTG_14043 -1 165 165 intron3 Pgra lcl|PGTG_14043 -1 215 215 intron2 Sros gnl|Sporo1|14614 -1 10 10 intron3 Sros gnl|Sporo1|14614 -1 18 18 intron2 Sros gnl|Sporo1|14614 -1 109 109 intron3 Sros gnl|Sporo1|14614 -1 184 184 intron2 Spun gnl|Spun1|SPPG_05687T0 -1 11 11 intron1 Spun gnl|Spun1|SPPG_05687T0 -1 18 18 intron2 Spun gnl|Spun1|SPPG_05687T0 -1 60 60 intron3 Spun gnl|Spun1|SPPG_05687T0 -1 135 135 intron3 Spun gnl|Spun1|SPPG_05687T0 -1 152 152 intron3 Spun gnl|Spun1|SPPG_05687T0 -1 184 184 intron2 Cneo gi|134117371|ref|XP_772912.1| -1 10 10 intron3 Cneo gi|134117371|ref|XP_772912.1| -1 18 18 intron2 Cneo gi|134117371|ref|XP_772912.1| -1 60 60 intron3 Cneo gi|134117371|ref|XP_772912.1| -1 135 135 intron3 Cneo gi|134117371|ref|XP_772912.1| -1 184 184 intron2 Fchr gnl|Phchr1|134946 -1 2 2 intron3 Fchr gnl|Phchr1|134946 -1 7 7 intron3 Fchr gnl|Phchr1|134946 -1 15 15 intron2 Fchr gnl|Phchr1|134946 -1 42 42 intron2 Fchr gnl|Phchr1|134946 -1 57 57 intron3 Fchr gnl|Phchr1|134946 -1 132 132 intron3 Fchr gnl|Phchr1|134946 -1 181 181 intron2 Fchr gnl|Phchr1|134946 -1 204 204 intron3 Lbic gnl|Lacbi1|300861 -1 7 7 intron3 Lbic gnl|Lacbi1|300861 -1 15 15 intron2 Lbic gnl|Lacbi1|300861 -1 42 42 intron2 Lbic gnl|Lacbi1|300861 -1 57 57 intron3 Lbic gnl|Lacbi1|300861 -1 132 132 intron3 Lbic gnl|Lacbi1|300861 -1 181 181 intron2 Ccin gi|169844390|ref|XP_001828916.1| -1 7 7 intron3 Ccin gi|169844390|ref|XP_001828916.1| -1 15 15 intron2 Ccin gi|169844390|ref|XP_001828916.1| -1 42 42 intron2 Ccin gi|169844390|ref|XP_001828916.1| -1 57 57 intron3 Ccin gi|169844390|ref|XP_001828916.1| -1 132 132 intron3 Ccin gi|169844390|ref|XP_001828916.1| -1 181 181 intron2 Abis gnl|Agabi_varbisH97_2|133199 -1 7 7 intron3 Abis gnl|Agabi_varbisH97_2|133199 -1 15 15 intron2 Abis gnl|Agabi_varbisH97_2|133199 -1 42 42 intron2 Abis gnl|Agabi_varbisH97_2|133199 -1 57 57 intron3 Abis gnl|Agabi_varbisH97_2|133199 -1 132 132 intron3 Abis gnl|Agabi_varbisH97_2|133199 -1 181 181 intron2 Dpul gnl|Dappu1|299986 -1 66 66 intron3 Dpul gnl|Dappu1|299986 -1 86 86 intron1 Apis gi|193683808|ref|XP_001946007.1| -1 65 65 intron3 Apis gi|193683808|ref|XP_001946007.1| -1 130 130 intron3 Mbre gi|167535786|ref|XP_001749566.1| -1 72 72 intron3 Tadh gi|196005255|ref|XP_002112494.1| -1 200 200 intron1 Dmoj gi|195115182|ref|XP_002002143.1| -1 64 64 intron3 Dmoj gi|195115182|ref|XP_002002143.1| -1 129 129 intron3 Dmel gi|19921534|ref|NP_609966.1| -1 64 64 intron3 Dmel gi|19921534|ref|NP_609966.1| -1 129 129 intron3 Agam gi|158298801|ref|XP_318959.3| -1 19 19 intron1 Agam gi|158298801|ref|XP_318959.3| -1 64 64 intron3 Aaeg gi|157119506|ref|XP_001659411.1| -1 19 19 intron1 Aaeg gi|157119506|ref|XP_001659411.1| -1 64 64 intron3 Phum gi|242020304|ref|XP_002430595.1| -1 59 59 intron3 Phum gi|242020304|ref|XP_002430595.1| -1 125 125 intron3 Hmag gi|221105634|ref|XP_002161676.1| -1 78 78 intron2 Cint gi|198427811|ref|XP_002131619.1| -1 41 41 intron1 Tcas gi|91085159|ref|XP_970524.1| -1 61 61 intron3 Tcas gi|91085159|ref|XP_970524.1| -1 127 127 intron3 Nvit gi|156544253|ref|XP_001606884.1| -1 136 136 intron3 Nvit gi|156544253|ref|XP_001606884.1| -1 219 219 intron2 Amel gi|110755021|ref|XP_394445.3| -1 145 145 intron3 Drer gi|113676266|ref|NP_001038931.1| -1 50 50 intron3 Tgut gi|224042776|ref|XP_002197799.1| -1 21 21 intron1