#| ca.umontreal.iro.evolution.introns.WriteIntronTable Tue Apr 12 01:40:48 EDT 2011 #| System: Mac OS X 10.6.7 x86_64 #| Java: Java HotSpot(TM) 64-Bit Server VM 19.1-b02-334 (1.6.0_24-b07-334-10M3326) mixed mode, Apple Inc. #| Current directory: /Users/csuros/Work/introns/larger-data/denovo/census2010/pipeline/3MCMC/HTML #| Arguments: #| Input alignment: alignments/KOG0400.faa #| Intron position list parenthesis: {i .. i} #| Intron positions are relative to: sequence intron1 0,100,200 intron2 0,80,160 intron3 0,50,100 Ehis gi|183231337|ref|XP_656099.2| -1 3 3 intron2 Ptet gi|145548060|ref|XP_001459711.1| -1 46 46 intron1 Ptet gi|145548060|ref|XP_001459711.1| -1 81 81 intron1 Ptet gi|145548060|ref|XP_001459711.1| -1 143 143 intron2 Tthe gi|146185324|ref|XP_001031586.2| -1 46 46 intron1 Tthe gi|146185324|ref|XP_001031586.2| -1 143 143 intron2 Nvit gi|156553504|ref|XP_001600790.1| -1 23 23 intron3 Nvit gi|156553504|ref|XP_001600790.1| -1 40 40 intron2 Mbre gi|167515792|ref|XP_001742237.1| -1 24 24 intron3 Mbre gi|167515792|ref|XP_001742237.1| -1 53 53 intron1 Prsp lcl|PTSG_01175T0 -1 24 24 intron3 Prsp lcl|PTSG_01175T0 -1 53 53 intron1 Vvin gi|225426890|ref|XP_002263492.1| -1 9 9 intron2 Vvin gi|225426890|ref|XP_002263492.1| -1 32 32 intron3 Vvin gi|225426890|ref|XP_002263492.1| -1 60 60 intron1 Vvin gi|225426890|ref|XP_002263492.1| -1 122 122 intron2 Ddis gi|66809663|ref|XP_638554.1| -1 8 8 intron2 Ddis gi|66809663|ref|XP_638554.1| -1 150 150 intron1 Dpur gnl|Dicpu1|53570 -1 8 8 intron2 Bbov gi|156083026|ref|XP_001608997.1| -1 79 79 intron1 Tann gi|84999094|ref|XP_954268.1| -1 79 79 intron1 Tpar gi|71032761|ref|XP_766022.1| -1 79 79 intron1 Ehux gnl|Emihu1|414120 -1 32 32 intron3 Ehux gnl|Emihu1|414120 -1 62 62 intron3 Ehux gnl|Emihu1|414120 -1 94 94 intron3 Tgon gi|237832833|ref|XP_002365714.1| -1 49 49 intron3 Tgon gi|237832833|ref|XP_002365714.1| -1 79 79 intron1 Sjap gi|213403730|ref|XP_002172637.1| -1 68 68 intron1 Sjap gi|213403730|ref|XP_002172637.1| -1 79 79 intron1 Sjap gi|213403730|ref|XP_002172637.1| -1 94 94 intron3 Spom gi|19114812|ref|NP_593900.1| -1 68 68 intron1 Spom gi|19114812|ref|NP_593900.1| -1 79 79 intron1 Spom gi|19114812|ref|NP_593900.1| -1 94 94 intron3 Crei gi|159464389|ref|XP_001690424.1| -1 10 10 intron1 Crei gi|159464389|ref|XP_001690424.1| -1 24 24 intron2 Crei gi|159464389|ref|XP_001690424.1| -1 96 96 intron1 Crei gi|159464389|ref|XP_001690424.1| -1 117 117 intron3 Vcar gnl|Volca1|77352 -1 10 10 intron1 Vcar gnl|Volca1|77352 -1 24 24 intron2 Vcar gnl|Volca1|77352 -1 96 96 intron1 Vcar gnl|Volca1|77352 -1 117 117 intron3 Sman gi|256088896|ref|XP_002580558.1| -1 51 51 intron1 Cowc lcl|CAOG_06031T0 -1 8 8 intron2 Cbri gi|268553431|ref|XP_002634701.1| -1 43 43 intron3 Cbri gi|268553431|ref|XP_002634701.1| -1 78 78 intron3 Cele gi|17554774|ref|NP_498393.1| -1 43 43 intron3 Cele gi|17554774|ref|NP_498393.1| -1 78 78 intron3 Tadh gi|196015585|ref|XP_002117649.1| -1 8 8 intron2 Tadh gi|196015585|ref|XP_002117649.1| -1 24 24 intron3 Tadh gi|196015585|ref|XP_002117649.1| -1 79 79 intron1 Tadh gi|196015585|ref|XP_002117649.1| -1 107 107 intron3 Tadh gi|196015585|ref|XP_002117649.1| -1 141 141 intron2 Lgig gnl|Lotgi1|181799 -1 8 8 intron2 Lgig gnl|Lotgi1|181799 -1 24 24 intron3 Lgig gnl|Lotgi1|181799 -1 51 51 intron1 Lgig gnl|Lotgi1|181799 -1 107 107 intron3 Lgig gnl|Lotgi1|181799 -1 141 141 intron2 Bmal gi|170580394|ref|XP_001895245.1| -1 43 43 intron3 Bmal gi|170580394|ref|XP_001895245.1| -1 78 78 intron3 Bmal gi|170580394|ref|XP_001895245.1| -1 107 107 intron3 Hmag gi|221119624|ref|XP_002166294.1| -1 8 8 intron2 Hmag gi|221119624|ref|XP_002166294.1| -1 24 24 intron3 Hmag gi|221119624|ref|XP_002166294.1| -1 51 51 intron1 Hmag gi|221119624|ref|XP_002166294.1| -1 107 107 intron3 Hmag gi|221119624|ref|XP_002166294.1| -1 141 141 intron2 Nvec gi|156363457|ref|XP_001626060.1| -1 8 8 intron2 Nvec gi|156363457|ref|XP_001626060.1| -1 24 24 intron3 Nvec gi|156363457|ref|XP_001626060.1| -1 51 51 intron1 Nvec gi|156363457|ref|XP_001626060.1| -1 79 79 intron1 Nvec gi|156363457|ref|XP_001626060.1| -1 107 107 intron3 Nvec gi|156363457|ref|XP_001626060.1| -1 141 141 intron2 CspI gnl|Capca1|149191 -1 8 8 intron2 CspI gnl|Capca1|149191 -1 24 24 intron3 CspI gnl|Capca1|149191 -1 51 51 intron1 CspI gnl|Capca1|149191 -1 141 141 intron2 Dpul gnl|Dappu1|308825 -1 8 8 intron2 Dpul gnl|Dappu1|308825 -1 51 51 intron1 Hrob gnl|Helro1|62947 -1 8 8 intron2 Hrob gnl|Helro1|62947 -1 24 24 intron3 Hrob gnl|Helro1|62947 -1 51 51 intron1 Hrob gnl|Helro1|62947 -1 107 107 intron3 Hrob gnl|Helro1|62947 -1 141 141 intron2 Dmel gi|85724904|ref|NP_001033885.1| -1 8 8 intron2 Dmel gi|85724904|ref|NP_001033885.1| -1 51 51 intron1 Dmoj gi|195115669|ref|XP_002002379.1| -1 8 8 intron2 Dmoj gi|195115669|ref|XP_002002379.1| -1 51 51 intron1 Aaeg gi|157137383|ref|XP_001657049.1| -1 70 70 intron3 Agam gi|118787292|ref|XP_315982.2| -1 70 70 intron3 Amel gi|66562243|ref|XP_624256.1| -1 8 8 intron2 Amel gi|66562243|ref|XP_624256.1| -1 51 51 intron1 Tcas gi|91093062|ref|XP_967936.1| -1 8 8 intron2 Tcas gi|91093062|ref|XP_967936.1| -1 51 51 intron1 Bmor gnl|Bmor|BGIBMGA011282-PA -1 8 8 intron2 Bmor gnl|Bmor|BGIBMGA011282-PA -1 51 51 intron1 Phum gi|242014635|ref|XP_002427992.1| -1 8 8 intron2 Amac gnl|Amac3|AMAG_02702T0 -1 79 79 intron1 Amac gnl|Amac3|AMAG_02702T0 -1 141 141 intron2 Scer gi|6320269|ref|NP_010349.1| -1 7 7 intron3 Aano gnl|Auran1|38489 -1 130 130 intron1 Ppat gi|168030653|ref|XP_001767837.1| -1 8 8 intron2 Ppat gi|168030653|ref|XP_001767837.1| -1 79 79 intron1 Ppat gi|168030653|ref|XP_001767837.1| -1 141 141 intron2 Smoe gnl|Selmo1|440805 -1 8 8 intron2 Smoe gnl|Selmo1|440805 -1 32 32 intron3 Smoe gnl|Selmo1|440805 -1 79 79 intron1 Smoe gnl|Selmo1|440805 -1 141 141 intron2 Atha gi|18411716|ref|NP_567104.1| -1 8 8 intron2 Atha gi|18411716|ref|NP_567104.1| -1 32 32 intron3 Atha gi|18411716|ref|NP_567104.1| -1 79 79 intron1 Atha gi|18411716|ref|NP_567104.1| -1 141 141 intron2 Sbic gi|242080333|ref|XP_002444935.1| -1 8 8 intron2 Sbic gi|242080333|ref|XP_002444935.1| -1 32 32 intron3 Sbic gi|242080333|ref|XP_002444935.1| -1 79 79 intron1 Sbic gi|242080333|ref|XP_002444935.1| -1 141 141 intron2 Osat gi|115474529|ref|NP_001060861.1| -1 8 8 intron2 Osat gi|115474529|ref|NP_001060861.1| -1 32 32 intron3 Osat gi|115474529|ref|NP_001060861.1| -1 79 79 intron1 Osat gi|115474529|ref|NP_001060861.1| -1 141 141 intron2 Pram gnl|Phyra1_1|71627 -1 79 79 intron1 Pcap gnl|PhycaF7|123491 -1 79 79 intron1 Psoj gnl|Physo1_1|108227 -1 79 79 intron1 C169 gnl|Coc_C169_1|21671 -1 32 32 intron3 C169 gnl|Coc_C169_1|21671 -1 62 62 intron3 C169 gnl|Coc_C169_1|21671 -1 130 130 intron3 C64A gnl|ChlNC64A_1|55999 -1 32 32 intron3 C64A gnl|ChlNC64A_1|55999 -1 79 79 intron1 C64A gnl|ChlNC64A_1|55999 -1 140 140 intron2 Sros gnl|Sporo1|7271 -1 11 11 intron3 Sros gnl|Sporo1|7271 -1 79 79 intron1 Sros gnl|Sporo1|7271 -1 93 93 intron2 Sros gnl|Sporo1|7271 -1 111 111 intron2 Mlar gnl|Mellp1|44130 -1 1 1 intron3 Mlar gnl|Mellp1|44130 -1 79 79 intron1 Mlar gnl|Mellp1|44130 -1 112 112 intron3 Pgra lcl|PGTG_11035 -1 1 1 intron3 Pgra lcl|PGTG_11035 -1 79 79 intron1 Pgra lcl|PGTG_11035 -1 112 112 intron3 Cneo gi|58266128|ref|XP_570220.1| -1 3 3 intron2 Cneo gi|58266128|ref|XP_570220.1| -1 79 79 intron1 Cneo gi|58266128|ref|XP_570220.1| -1 113 113 intron2 Pbla gnl|Phybl1|28327 -1 4 4 intron3 Pbla gnl|Phybl1|28327 -1 141 141 intron2 Rory lcl|RO3G_07898 -1 141 141 intron2 Mcir gnl|Mucci2|155045 -1 141 141 intron2 Fchr gnl|Phchr1|4611 -1 12 12 intron1 Fchr gnl|Phchr1|4611 -1 79 79 intron1 Lbic gnl|Lacbi1|191503 -1 12 12 intron1 Lbic gnl|Lacbi1|191503 -1 79 79 intron1 Ccin gi|169850891|ref|XP_001832137.1| -1 12 12 intron1 Ccin gi|169850891|ref|XP_001832137.1| -1 79 79 intron1 Abis gnl|Agabi_varbisH97_2|194343 -1 12 12 intron1 Abis gnl|Agabi_varbisH97_2|194343 -1 79 79 intron1 Umay gi|71004278|ref|XP_756805.1| -1 6 6 intron1 Spun gnl|Spun1|SPPG_03270T0 -1 55 55 intron2 Spun gnl|Spun1|SPPG_03270T0 -1 141 141 intron2 Bden lcl|BDEG_01051 -1 141 141 intron2 Gzea gi|46125341|ref|XP_387224.1| -1 68 68 intron1 Gzea gi|46125341|ref|XP_387224.1| -1 79 79 intron1 Gzea gi|46125341|ref|XP_387224.1| -1 94 94 intron3 Gzea gi|46125341|ref|XP_387224.1| -1 124 124 intron2 Anid gi|67541018|ref|XP_664283.1| -1 68 68 intron1 Anid gi|67541018|ref|XP_664283.1| -1 79 79 intron1 Pnod gi|169602793|ref|XP_001794818.1| -1 65 65 intron1 Pnod gi|169602793|ref|XP_001794818.1| -1 79 79 intron1 Pnod gi|169602793|ref|XP_001794818.1| -1 113 113 intron2 Chet gnl|CocheC5_1|82068 -1 49 49 intron2 Chet gnl|CocheC5_1|82068 -1 79 79 intron1 Chet gnl|CocheC5_1|82068 -1 124 124 intron3 Prep gi|189203709|ref|XP_001938190.1| -1 49 49 intron2 Prep gi|189203709|ref|XP_001938190.1| -1 79 79 intron1 Prep gi|189203709|ref|XP_001938190.1| -1 124 124 intron3 Ncra gi|85111661|ref|XP_964043.1| -1 68 68 intron1 Ncra gi|85111661|ref|XP_964043.1| -1 79 79 intron1 Ncra gi|85111661|ref|XP_964043.1| -1 94 94 intron3 Mgri gi|39975009|ref|XP_368895.1| -1 68 68 intron1 Mgri gi|39975009|ref|XP_368895.1| -1 79 79 intron1 Mgri gi|39975009|ref|XP_368895.1| -1 94 94 intron3 Mfij gnl|Mycfi1|87337 -1 68 68 intron1 Mfij gnl|Mycfi1|87337 -1 79 79 intron1 Mfij gnl|Mycfi1|87337 -1 94 94 intron3 Mgra gnl|Mycgr3|80995 -1 68 68 intron1 Mgra gnl|Mycgr3|80995 -1 79 79 intron1 Mgra gnl|Mycgr3|80995 -1 94 94 intron3 Cimm gi|119189291|ref|XP_001245252.1| -1 68 68 intron1 Cimm gi|119189291|ref|XP_001245252.1| -1 79 79 intron1 Cimm gi|119189291|ref|XP_001245252.1| -1 94 94 intron3 Bfuc gi|154319422|ref|XP_001559028.1| -1 68 68 intron1 Bfuc gi|154319422|ref|XP_001559028.1| -1 79 79 intron1 Bfuc gi|154319422|ref|XP_001559028.1| -1 94 94 intron3 Sscl gi|156061679|ref|XP_001596762.1| -1 68 68 intron1 Sscl gi|156061679|ref|XP_001596762.1| -1 79 79 intron1 Sscl gi|156061679|ref|XP_001596762.1| -1 94 94 intron3