#| ca.umontreal.iro.evolution.introns.WriteIntronTable Tue Apr 12 01:40:48 EDT 2011 #| System: Mac OS X 10.6.7 x86_64 #| Java: Java HotSpot(TM) 64-Bit Server VM 19.1-b02-334 (1.6.0_24-b07-334-10M3326) mixed mode, Apple Inc. #| Current directory: /Users/csuros/Work/introns/larger-data/denovo/census2010/pipeline/3MCMC/HTML #| Arguments: #| Input alignment: alignments/KOG0402.faa #| Intron position list parenthesis: {i .. i} #| Intron positions are relative to: sequence intron1 0,100,200 intron2 0,80,160 intron3 0,50,100 Ptet gi|145506076|ref|XP_001439004.1| -1 44 44 intron3 Ptet gi|145506076|ref|XP_001439004.1| -1 72 72 intron2 Bbov gi|156083915|ref|XP_001609441.1| -1 7 7 intron3 Bbov gi|156083915|ref|XP_001609441.1| -1 44 44 intron3 Pyoe gi|82705766|ref|XP_727103.1| -1 27 27 intron3 Pyoe gi|82705766|ref|XP_727103.1| -1 64 64 intron3 Pfal gi|124801126|ref|XP_001349609.1| -1 7 7 intron3 Pfal gi|124801126|ref|XP_001349609.1| -1 44 44 intron3 Pviv gi|156093984|ref|XP_001613030.1| -1 7 7 intron3 Pviv gi|156093984|ref|XP_001613030.1| -1 44 44 intron3 Tann gi|85000677|ref|XP_955057.1| -1 7 7 intron3 Tann gi|85000677|ref|XP_955057.1| -1 44 44 intron3 Tpar gi|71027495|ref|XP_763391.1| -1 7 7 intron3 Tpar gi|71027495|ref|XP_763391.1| -1 44 44 intron3 Tthe gi|118364772|ref|XP_001015607.1| -1 44 44 intron3 Mbre gi|167523204|ref|XP_001745939.1| -1 72 72 intron2 Cint gi|198424261|ref|XP_002130012.1| -1 39 39 intron1 Cint gi|198424261|ref|XP_002130012.1| -1 62 62 intron3 Pram gnl|Phyra1_1|95867 -1 1 1 intron3 Psoj gnl|Physo1_1|115048 -1 1 1 intron3 Pcap gnl|PhycaF7|101379 -1 1 1 intron3 Sman gi|256090666|ref|XP_002581304.1| -1 11 11 intron3 Sman gi|256090666|ref|XP_002581304.1| -1 54 54 intron3 Sman gi|256090666|ref|XP_002581304.1| -1 82 82 intron2 Tadh gi|196002613|ref|XP_002111174.1| -1 1 1 intron3 Tadh gi|196002613|ref|XP_002111174.1| -1 44 44 intron3 Tadh gi|196002613|ref|XP_002111174.1| -1 72 72 intron2 Edis gi|167395051|ref|XP_001741204.1| -1 7 7 intron1 Edis gi|167395051|ref|XP_001741204.1| -1 22 22 intron3 Tgon gi|237844889|ref|XP_002371742.1| -1 7 7 intron3 Tgon gi|237844889|ref|XP_002371742.1| -1 44 44 intron3 Spom gi|19112426|ref|NP_595634.1| -1 53 53 intron1 Sjap gi|213405893|ref|XP_002173718.1| -1 53 53 intron1 Prsp lcl|PTSG_04261T0 -1 44 44 intron3 M299 gi|255089517|ref|XP_002506680.1| -1 9 9 intron1 Mpus gnl|MicpuC2|28424 -1 9 9 intron1 Otau gnl|Ostta4|24491 -1 9 9 intron1 Oluc gi|145353785|ref|XP_001421182.1| -1 9 9 intron1 O809 gnl|OstRCC809_2|94430 -1 9 9 intron1 Vcar gnl|Volca1|121664 -1 1 1 intron3 Vcar gnl|Volca1|121664 -1 44 44 intron3 Vcar gnl|Volca1|121664 -1 72 72 intron2 Vcar gnl|Volca1|121664 -1 119 119 intron3 Vcar gnl|Volca1|121664 -1 154 154 intron3 Vcar gnl|Volca1|121664 -1 205 205 intron2 Vcar gnl|Volca1|121664 -1 242 242 intron3 Vcar gnl|Volca1|121664 -1 287 287 intron3 Vcar gnl|Volca1|121664 -1 342 342 intron3 Vcar gnl|Volca1|121664 -1 370 370 intron3 Vcar gnl|Volca1|121664 -1 407 407 intron3 Vcar gnl|Volca1|121664 -1 453 453 intron3 Vcar gnl|Volca1|121664 -1 499 499 intron3 Vcar gnl|Volca1|121664 -1 519 519 intron3 Ppat gi|168051227|ref|XP_001778057.1| -1 15 15 intron1 Ppat gi|168051227|ref|XP_001778057.1| -1 44 44 intron3 Atha gi|15228411|ref|NP_187706.1| -1 1 1 intron3 Atha gi|15228411|ref|NP_187706.1| -1 15 15 intron1 Atha gi|15228411|ref|NP_187706.1| -1 44 44 intron3 Smoe gnl|Selmo1|227221 -1 1 1 intron3 Smoe gnl|Selmo1|227221 -1 15 15 intron1 Smoe gnl|Selmo1|227221 -1 44 44 intron3 Smoe gnl|Selmo1|227221 -1 72 72 intron2 Osat gi|115465371|ref|NP_001056285.1| -1 1 1 intron3 Osat gi|115465371|ref|NP_001056285.1| -1 15 15 intron1 Osat gi|115465371|ref|NP_001056285.1| -1 44 44 intron3 Osat gi|115465371|ref|NP_001056285.1| -1 72 72 intron2 Sbic gi|242072670|ref|XP_002446271.1| -1 1 1 intron3 Sbic gi|242072670|ref|XP_002446271.1| -1 15 15 intron1 Sbic gi|242072670|ref|XP_002446271.1| -1 44 44 intron3 Sbic gi|242072670|ref|XP_002446271.1| -1 72 72 intron2 Vvin gi|225427377|ref|XP_002282974.1| -1 1 1 intron3 Vvin gi|225427377|ref|XP_002282974.1| -1 15 15 intron1 Vvin gi|225427377|ref|XP_002282974.1| -1 44 44 intron3 Vvin gi|225427377|ref|XP_002282974.1| -1 72 72 intron2 C64A gnl|ChlNC64A_1|48537 -1 1 1 intron3 C64A gnl|ChlNC64A_1|48537 -1 44 44 intron3 C64A gnl|ChlNC64A_1|48537 -1 72 72 intron2 Crei gi|159477034|ref|XP_001696616.1| -1 1 1 intron3 Crei gi|159477034|ref|XP_001696616.1| -1 44 44 intron3 Crei gi|159477034|ref|XP_001696616.1| -1 72 72 intron2 Ehux gnl|Emihu1|362722 -1 76 76 intron3 Lgig gnl|Lotgi1|225011 -1 1 1 intron3 Lgig gnl|Lotgi1|225011 -1 44 44 intron3 Lgig gnl|Lotgi1|225011 -1 72 72 intron2 Drer gi|157502233|ref|NP_001098996.1| -1 1 1 intron3 Drer gi|157502233|ref|NP_001098996.1| -1 44 44 intron3 Drer gi|157502233|ref|NP_001098996.1| -1 72 72 intron2 Tgut gi|224054734|ref|XP_002193580.1| -1 1 1 intron3 Tgut gi|224054734|ref|XP_002193580.1| -1 44 44 intron3 Tgut gi|224054734|ref|XP_002193580.1| -1 72 72 intron2 Hsap gi|4506643|ref|NP_000989.1| -1 1 1 intron3 Hsap gi|4506643|ref|NP_000989.1| -1 44 44 intron3 Hsap gi|4506643|ref|NP_000989.1| -1 72 72 intron2 Hmag gi|221131597|ref|XP_002164628.1| -1 1 1 intron3 Hmag gi|221131597|ref|XP_002164628.1| -1 44 44 intron3 Hmag gi|221131597|ref|XP_002164628.1| -1 72 72 intron2 Nvec gi|156406012|ref|XP_001641025.1| -1 1 1 intron3 Nvec gi|156406012|ref|XP_001641025.1| -1 44 44 intron3 Nvec gi|156406012|ref|XP_001641025.1| -1 72 72 intron2 Hrob gnl|Helro1|70594 -1 43 43 intron3 Hrob gnl|Helro1|70594 -1 71 71 intron2 CspI gnl|Capca1|174185 -1 1 1 intron3 CspI gnl|Capca1|174185 -1 44 44 intron3 Spur gi|115720171|ref|XP_789512.2| -1 21 21 intron1 Spur gi|115720171|ref|XP_789512.2| -1 93 93 intron3 Spur gi|115720171|ref|XP_789512.2| -1 121 121 intron2 Bmal gi|170594515|ref|XP_001902009.1| -1 22 22 intron2 Bmal gi|170594515|ref|XP_001902009.1| -1 84 84 intron3 Isca gi|241779163|ref|XP_002399852.1| -1 44 44 intron3 Isca gi|241779163|ref|XP_002399852.1| -1 72 72 intron2 Bflo gi|260793852|ref|XP_002591924.1| -1 1 1 intron3 Bflo gi|260793852|ref|XP_002591924.1| -1 44 44 intron3 Bflo gi|260793852|ref|XP_002591924.1| -1 72 72 intron2 Apis gi|187175303|ref|NP_001119668.1| -1 44 44 intron3 Phum gi|242024932|ref|XP_002432880.1| -1 1 1 intron3 Phum gi|242024932|ref|XP_002432880.1| -1 44 44 intron3 Bmor gnl|Bmor|BGIBMGA008903-PA -1 1 1 intron3 Bmor gnl|Bmor|BGIBMGA008903-PA -1 44 44 intron3 Dpul gnl|Dappu1|230286 -1 1 1 intron3 Dpul gnl|Dappu1|230286 -1 44 44 intron3 Tcas gi|189240344|ref|XP_971874.2| -1 1 1 intron3 Tcas gi|189240344|ref|XP_971874.2| -1 44 44 intron3 Agam gi|158298899|ref|XP_319038.4| -1 1 1 intron3 Agam gi|158298899|ref|XP_319038.4| -1 44 44 intron3 Aaeg gi|157135222|ref|XP_001663436.1| -1 1 1 intron3 Aaeg gi|157135222|ref|XP_001663436.1| -1 44 44 intron3 Nvit gi|156553397|ref|XP_001602866.1| -1 1 1 intron3 Nvit gi|156553397|ref|XP_001602866.1| -1 44 44 intron3 Amel gi|110755033|ref|XP_001121282.1| -1 1 1 intron3 Amel gi|110755033|ref|XP_001121282.1| -1 44 44 intron3 Dmel gi|24581863|ref|NP_723060.1| -1 1 1 intron3 Dmel gi|24581863|ref|NP_723060.1| -1 44 44 intron3 Dmoj gi|195114268|ref|XP_002001689.1| -1 1 1 intron3 Dmoj gi|195114268|ref|XP_002001689.1| -1 44 44 intron3 Scer gi|6322554|ref|NP_012628.1| -1 1 1 intron2 Cneo gi|58263150|ref|XP_568985.1| -1 1 1 intron3 Cneo gi|58263150|ref|XP_568985.1| -1 25 25 intron2 Cneo gi|58263150|ref|XP_568985.1| -1 44 44 intron3 Cowc lcl|CAOG_06317T0 -1 1 1 intron3 Ddis gi|66813266|ref|XP_640812.1| -1 1 1 intron3 Ddis gi|66813266|ref|XP_640812.1| -1 44 44 intron3 Dpur gnl|Dicpu1|48145 -1 1 1 intron3 Dpur gnl|Dicpu1|48145 -1 33 33 intron3 Umay gi|71013808|ref|XP_758665.1| -1 180 180 intron2 Bden lcl|BDEG_01994 -1 2 2 intron3 Bden lcl|BDEG_01994 -1 44 44 intron3 Mcir gnl|Mucci2|173003 -1 1 1 intron3 Mcir gnl|Mucci2|173003 -1 72 72 intron2 Rory lcl|RO3G_11147 -1 1 1 intron3 Rory lcl|RO3G_11147 -1 8 8 intron1 Rory lcl|RO3G_11147 -1 72 72 intron2 Pbla gnl|Phybl1|36758 -1 1 1 intron3 Pbla gnl|Phybl1|36758 -1 6 6 intron2 Pbla gnl|Phybl1|36758 -1 72 72 intron2 Amac gnl|Amac3|AMAG_05221T0 -1 2 2 intron3 Amac gnl|Amac3|AMAG_05221T0 -1 73 73 intron2 Spun lcl|SPPG_05030T0 -1 2 2 intron3 Spun lcl|SPPG_05030T0 -1 44 44 intron3 Spun lcl|SPPG_05030T0 -1 86 86 intron1 Fchr gnl|Phchr1|127246 -1 14 14 intron3 Fchr gnl|Phchr1|127246 -1 26 26 intron3 Fchr gnl|Phchr1|127246 -1 44 44 intron1 Fchr gnl|Phchr1|127246 -1 84 84 intron2 Fchr gnl|Phchr1|127246 -1 95 95 intron3 Ccin gi|169849891|ref|XP_001831644.1| -1 22 22 intron1 Ccin gi|169849891|ref|XP_001831644.1| -1 170 170 intron2 Ccin gi|169849891|ref|XP_001831644.1| -1 203 203 intron2 Ccin gi|169849891|ref|XP_001831644.1| -1 238 238 intron1 Ccin gi|169849891|ref|XP_001831644.1| -1 261 261 intron1 Ccin gi|169849891|ref|XP_001831644.1| -1 280 280 intron2 Ccin gi|169849891|ref|XP_001831644.1| -1 311 311 intron3 Ccin gi|169849891|ref|XP_001831644.1| -1 337 337 intron1 Ccin gi|169849891|ref|XP_001831644.1| -1 378 378 intron3 Ccin gi|169849891|ref|XP_001831644.1| -1 399 399 intron3 Ccin gi|169849891|ref|XP_001831644.1| -1 488 488 intron2 Ccin gi|169849891|ref|XP_001831644.1| -1 591 591 intron1 Ccin gi|169849891|ref|XP_001831644.1| -1 624 624 intron1 Ccin gi|169849891|ref|XP_001831644.1| -1 650 650 intron2 Ccin gi|169849891|ref|XP_001831644.1| -1 685 685 intron3 Ccin gi|169849891|ref|XP_001831644.1| -1 700 700 intron3 Ccin gi|169849891|ref|XP_001831644.1| -1 728 728 intron3 Ccin gi|169849891|ref|XP_001831644.1| -1 765 765 intron2 Lbic gnl|Lacbi1|188072 -1 1 1 intron3 Lbic gnl|Lacbi1|188072 -1 16 16 intron3 Lbic gnl|Lacbi1|188072 -1 44 44 intron3 Lbic gnl|Lacbi1|188072 -1 81 81 intron2 Sros gnl|Sporo1|25855 -1 16 16 intron3 Sros gnl|Sporo1|25855 -1 38 38 intron2 Sros gnl|Sporo1|25855 -1 44 44 intron3 Sros gnl|Sporo1|25855 -1 81 81 intron2 Pgra lcl|PGTG_19079 -1 22 22 intron2 Pgra lcl|PGTG_19079 -1 64 64 intron1 Pgra lcl|PGTG_19079 -1 94 94 intron3 Pgra lcl|PGTG_19079 -1 162 162 intron3 Pgra lcl|PGTG_19079 -1 177 177 intron3 Pgra lcl|PGTG_19079 -1 205 205 intron3 Pgra lcl|PGTG_19079 -1 242 242 intron2 Mlar gnl|Mellp1|84341 -1 1 1 intron3 Mlar gnl|Mellp1|84341 -1 16 16 intron3 Mlar gnl|Mellp1|84341 -1 44 44 intron3 Mlar gnl|Mellp1|84341 -1 81 81 intron2 Ncra gi|164423949|ref|XP_958607.2| -1 13 13 intron3 Ncra gi|164423949|ref|XP_958607.2| -1 17 17 intron2 Ncra gi|164423949|ref|XP_958607.2| -1 28 28 intron1 Ncra gi|164423949|ref|XP_958607.2| -1 72 72 intron2 Mgri gi|39977337|ref|XP_370056.1| -1 7 7 intron1 Mgri gi|39977337|ref|XP_370056.1| -1 17 17 intron2 Mgri gi|39977337|ref|XP_370056.1| -1 39 39 intron2 Bfuc gi|154315665|ref|XP_001557155.1| -1 17 17 intron2 Sscl gi|156033143|ref|XP_001585408.1| -1 17 17 intron2 Sscl gi|156033143|ref|XP_001585408.1| -1 72 72 intron2 Gzea gi|46124759|ref|XP_386933.1| -1 11 11 intron2 Gzea gi|46124759|ref|XP_386933.1| -1 17 17 intron2 Gzea gi|46124759|ref|XP_386933.1| -1 72 72 intron2 Cimm gi|119175026|ref|XP_001239814.1| -1 7 7 intron1 Cimm gi|119175026|ref|XP_001239814.1| -1 17 17 intron2 Cimm gi|119175026|ref|XP_001239814.1| -1 72 72 intron2 Uree gi|258566892|ref|XP_002584190.1| -1 7 7 intron1 Uree gi|258566892|ref|XP_002584190.1| -1 17 17 intron2 Uree gi|258566892|ref|XP_002584190.1| -1 72 72 intron2 Mfij gnl|Mycfi1|88568 -1 17 17 intron2 Mfij gnl|Mycfi1|88568 -1 72 72 intron2 Mgra gnl|Mycgr3|85212 -1 17 17 intron2 Mgra gnl|Mycgr3|85212 -1 72 72 intron2 Prep gi|189198788|ref|XP_001935731.1| -1 30 30 intron3 Prep gi|189198788|ref|XP_001935731.1| -1 42 42 intron2 Prep gi|189198788|ref|XP_001935731.1| -1 72 72 intron2 Pnod gi|169609490|ref|XP_001798164.1| -1 4 4 intron1 Pnod gi|169609490|ref|XP_001798164.1| -1 30 30 intron3 Pnod gi|169609490|ref|XP_001798164.1| -1 72 72 intron2 Chet gnl|CocheC5_1|59632 -1 26 26 intron3 Chet gnl|CocheC5_1|59632 -1 68 68 intron2