#| ca.umontreal.iro.evolution.introns.WriteIntronTable Tue Apr 12 01:40:52 EDT 2011 #| System: Mac OS X 10.6.7 x86_64 #| Java: Java HotSpot(TM) 64-Bit Server VM 19.1-b02-334 (1.6.0_24-b07-334-10M3326) mixed mode, Apple Inc. #| Current directory: /Users/csuros/Work/introns/larger-data/denovo/census2010/pipeline/3MCMC/HTML #| Arguments: #| Input alignment: alignments/KOG0672.faa #| Intron position list parenthesis: {i .. i} #| Intron positions are relative to: sequence intron1 0,100,200 intron2 0,80,160 intron3 0,50,100 Atha gi|42571809|ref|NP_973995.1| -1 163 163 intron3 Anid gi|67522621|ref|XP_659371.1| -1 627 627 intron1 Cneo gi|58258557|ref|XP_566691.1| -1 59 59 intron3 Cneo gi|58258557|ref|XP_566691.1| -1 113 113 intron3 Cneo gi|58258557|ref|XP_566691.1| -1 126 126 intron3 Cneo gi|58258557|ref|XP_566691.1| -1 159 159 intron1 Mgra gnl|Mycgr3|17882 -1 154 154 intron3 Sscl gi|156043087|ref|XP_001588100.1| -1 252 252 intron3 Sscl gi|156043087|ref|XP_001588100.1| -1 303 303 intron3 Sscl gi|156043087|ref|XP_001588100.1| -1 412 412 intron1 Sscl gi|156043087|ref|XP_001588100.1| -1 579 579 intron3 Ehux gnl|Emihu1|459485 -1 167 167 intron2 Ehux gnl|Emihu1|459485 -1 202 202 intron2 Ehux gnl|Emihu1|459485 -1 233 233 intron1 Sros gnl|Sporo1|23578 -1 63 63 intron3 Sros gnl|Sporo1|23578 -1 104 104 intron3 Sros gnl|Sporo1|23578 -1 117 117 intron3 Sros gnl|Sporo1|23578 -1 147 147 intron3 Sros gnl|Sporo1|23578 -1 205 205 intron1 Ccin gi|169857624|ref|XP_001835460.1| -1 230 230 intron2 Ccin gi|169857624|ref|XP_001835460.1| -1 977 977 intron3 Ccin gi|169857624|ref|XP_001835460.1| -1 1184 1184 intron2 Ccin gi|169857624|ref|XP_001835460.1| -1 1217 1217 intron2 Ccin gi|169857624|ref|XP_001835460.1| -1 1236 1236 intron3 Abis gnl|Agabi_varbisH97_2|179248 -1 44 44 intron3 Abis gnl|Agabi_varbisH97_2|179248 -1 82 82 intron3 Abis gnl|Agabi_varbisH97_2|179248 -1 125 125 intron3 Abis gnl|Agabi_varbisH97_2|179248 -1 183 183 intron1 Lbic gnl|Lacbi1|182812 -1 37 37 intron3 Lbic gnl|Lacbi1|182812 -1 75 75 intron3 Lbic gnl|Lacbi1|182812 -1 118 118 intron3 Lbic gnl|Lacbi1|182812 -1 176 176 intron1 Tgon gi|237835021|ref|XP_002366808.1| -1 98 98 intron3 Tgon gi|237835021|ref|XP_002366808.1| -1 139 139 intron3 Tgon gi|237835021|ref|XP_002366808.1| -1 169 169 intron3 Tgon gi|237835021|ref|XP_002366808.1| -1 211 211 intron3 Mbre gi|167537521|ref|XP_001750429.1| -1 30 30 intron1 Mbre gi|167537521|ref|XP_001750429.1| -1 55 55 intron3 Mbre gi|167537521|ref|XP_001750429.1| -1 154 154 intron3 Mbre gi|167537521|ref|XP_001750429.1| -1 202 202 intron3 Cbri gi|268566655|ref|XP_002647606.1| -1 28 28 intron3 Cbri gi|268566655|ref|XP_002647606.1| -1 80 80 intron3 Cbri gi|268566655|ref|XP_002647606.1| -1 123 123 intron1 Cele gi|17560194|ref|NP_506341.1| -1 24 24 intron3 Cele gi|17560194|ref|NP_506341.1| -1 77 77 intron3 Cele gi|17560194|ref|NP_506341.1| -1 120 120 intron1 Pviv gi|156097955|ref|XP_001615010.1| -1 108 108 intron3 Pviv gi|156097955|ref|XP_001615010.1| -1 165 165 intron1 Pfal gi|124512460|ref|XP_001349363.1| -1 106 106 intron3 Pfal gi|124512460|ref|XP_001349363.1| -1 148 148 intron3 Pfal gi|124512460|ref|XP_001349363.1| -1 163 163 intron1 Bmal gi|170582145|ref|XP_001895998.1| -1 31 31 intron1 Bmal gi|170582145|ref|XP_001895998.1| -1 116 116 intron2 Bmal gi|170582145|ref|XP_001895998.1| -1 181 181 intron3 Bmal gi|170582145|ref|XP_001895998.1| -1 228 228 intron3 Bmal gi|170582145|ref|XP_001895998.1| -1 307 307 intron3 Bmal gi|170582145|ref|XP_001895998.1| -1 361 361 intron3 Bmal gi|170582145|ref|XP_001895998.1| -1 405 405 intron1 Bmal gi|170582145|ref|XP_001895998.1| -1 478 478 intron3 O809 gnl|OstRCC809_2|31577 -1 64 64 intron2 Ddis gi|66816683|ref|XP_642351.1| -1 88 88 intron3 Dpur gnl|Dicpu1|54757 -1 98 98 intron3 Sman gi|256075713|ref|XP_002574161.1| -1 80 80 intron3 Prsp lcl|PTSG_01391T0 -1 50 50 intron3 Prsp lcl|PTSG_01391T0 -1 79 79 intron3 Prsp lcl|PTSG_01391T0 -1 127 127 intron3 Prsp lcl|PTSG_01391T0 -1 154 154 intron3 Prsp lcl|PTSG_01391T0 -1 181 181 intron1 Pgra lcl|PGTG_00769 -1 34 34 intron3 Pgra lcl|PGTG_00769 -1 75 75 intron3 Pgra lcl|PGTG_00769 -1 112 112 intron3 Pgra lcl|PGTG_00769 -1 142 142 intron3 Pgra lcl|PGTG_00769 -1 201 201 intron1 Tpse gi|224002034|ref|XP_002290689.1| -1 68 68 intron1 Tpse gi|224002034|ref|XP_002290689.1| -1 125 125 intron1 Tpse gi|224002034|ref|XP_002290689.1| -1 150 150 intron1 Fcyl gnl|Fracy1|186978 -1 54 54 intron1 Fcyl gnl|Fracy1|186978 -1 76 76 intron1 Hmag gi|221119576|ref|XP_002163045.1| -1 31 31 intron3 Hmag gi|221119576|ref|XP_002163045.1| -1 67 67 intron3 Hmag gi|221119576|ref|XP_002163045.1| -1 80 80 intron3 Hmag gi|221119576|ref|XP_002163045.1| -1 110 110 intron3 Hmag gi|221119576|ref|XP_002163045.1| -1 167 167 intron1 Cowc gnl|Cowc1|CAOG_00222T0 -1 156 156 intron3 Cowc gnl|Cowc1|CAOG_00222T0 -1 169 169 intron3 Cowc gnl|Cowc1|CAOG_00222T0 -1 199 199 intron3 Cowc gnl|Cowc1|CAOG_00222T0 -1 257 257 intron1 Bbov gi|156085597|ref|XP_001610208.1| -1 39 39 intron3 Bbov gi|156085597|ref|XP_001610208.1| -1 83 83 intron3 Bbov gi|156085597|ref|XP_001610208.1| -1 113 113 intron3 Bbov gi|156085597|ref|XP_001610208.1| -1 155 155 intron3 Tann gi|84994658|ref|XP_952051.1| -1 39 39 intron3 Tann gi|84994658|ref|XP_952051.1| -1 82 82 intron3 Tann gi|84994658|ref|XP_952051.1| -1 112 112 intron3 Tann gi|84994658|ref|XP_952051.1| -1 154 154 intron3 Tadh gi|196000841|ref|XP_002110288.1| -1 30 30 intron3 Tadh gi|196000841|ref|XP_002110288.1| -1 62 62 intron3 Tadh gi|196000841|ref|XP_002110288.1| -1 75 75 intron3 Tadh gi|196000841|ref|XP_002110288.1| -1 105 105 intron3 Tadh gi|196000841|ref|XP_002110288.1| -1 162 162 intron1 C169 gnl|Coc_C169_1|36666 -1 15 15 intron2 C169 gnl|Coc_C169_1|36666 -1 71 71 intron1 C169 gnl|Coc_C169_1|36666 -1 123 123 intron3 C169 gnl|Coc_C169_1|36666 -1 166 166 intron3 Cint gi|198422676|ref|XP_002130996.1| -1 54 54 intron3 Nvec gi|156397293|ref|XP_001637826.1| -1 42 42 intron3 Nvec gi|156397293|ref|XP_001637826.1| -1 74 74 intron3 Nvec gi|156397293|ref|XP_001637826.1| -1 87 87 intron3 Nvec gi|156397293|ref|XP_001637826.1| -1 117 117 intron3 Nvec gi|156397293|ref|XP_001637826.1| -1 174 174 intron1 Smoe gnl|Selmo1|97743 -1 100 100 intron3 Sbic gi|242056067|ref|XP_002457179.1| -1 110 110 intron3 Vvin gi|225456777|ref|XP_002276829.1| -1 1 1 intron3 Vvin gi|225456777|ref|XP_002276829.1| -1 117 117 intron3 Osat gi|115466938|ref|NP_001057068.1| -1 113 113 intron3 Tthe gi|146166010|ref|XP_001015897.2| -1 122 122 intron3 Tthe gi|146166010|ref|XP_001015897.2| -1 166 166 intron3 Tthe gi|146166010|ref|XP_001015897.2| -1 198 198 intron1 Spun lcl|SPPG_07269T0 -1 36 36 intron3 Spun lcl|SPPG_07269T0 -1 71 71 intron3 Spun lcl|SPPG_07269T0 -1 84 84 intron3 Spun lcl|SPPG_07269T0 -1 114 114 intron3 Dmel gi|24657262|ref|NP_726105.1| -1 59 59 intron1 Dmel gi|24657262|ref|NP_726105.1| -1 105 105 intron3 Dmoj gi|195122296|ref|XP_002005648.1| -1 37 37 intron3 Dmoj gi|195122296|ref|XP_002005648.1| -1 105 105 intron3 Tcas gi|91093228|ref|XP_967462.1| -1 33 33 intron3 Tcas gi|91093228|ref|XP_967462.1| -1 101 101 intron3 Amel gi|48103807|ref|XP_395652.1| -1 142 142 intron3 Nvit gi|156544456|ref|XP_001607646.1| -1 142 142 intron3 Bmor gnl|Bmor|BGIBMGA009859-PA -1 51 51 intron3 Phum gi|242002948|ref|XP_002422553.1| -1 76 76 intron1 Phum gi|242002948|ref|XP_002422553.1| -1 164 164 intron3 Phum gi|242002948|ref|XP_002422553.1| -1 240 240 intron3 Hrob gnl|Helro1|70216 -1 49 49 intron3 Hrob gnl|Helro1|70216 -1 81 81 intron3 Hrob gnl|Helro1|70216 -1 124 124 intron3 Hrob gnl|Helro1|70216 -1 181 181 intron1 Dpul gnl|Dappu1|193190 -1 95 95 intron3 Lgig gnl|Lotgi1|111587 -1 34 34 intron1 Lgig gnl|Lotgi1|111587 -1 61 61 intron3 Lgig gnl|Lotgi1|111587 -1 104 104 intron3 Lgig gnl|Lotgi1|111587 -1 161 161 intron1 Drer gi|41387210|ref|NP_957074.1| -1 48 48 intron3 Drer gi|41387210|ref|NP_957074.1| -1 80 80 intron3 Drer gi|41387210|ref|NP_957074.1| -1 123 123 intron3 Drer gi|41387210|ref|NP_957074.1| -1 180 180 intron1 Hsap gi|71725351|ref|NP_068595.3| -1 45 45 intron3 Hsap gi|71725351|ref|NP_068595.3| -1 77 77 intron3 Hsap gi|71725351|ref|NP_068595.3| -1 120 120 intron3 Hsap gi|71725351|ref|NP_068595.3| -1 177 177 intron1 Tgut gi|224061755|ref|XP_002195414.1| -1 51 51 intron3 Tgut gi|224061755|ref|XP_002195414.1| -1 83 83 intron3 Tgut gi|224061755|ref|XP_002195414.1| -1 126 126 intron3 Tgut gi|224061755|ref|XP_002195414.1| -1 183 183 intron1 Ggal gi|118095527|ref|XP_425049.2| -1 45 45 intron3 Ggal gi|118095527|ref|XP_425049.2| -1 77 77 intron3 Ggal gi|118095527|ref|XP_425049.2| -1 120 120 intron3 Ggal gi|118095527|ref|XP_425049.2| -1 177 177 intron1 Amac gnl|Amac3|AMAG_11753T0 -1 28 28 intron1 Amac gnl|Amac3|AMAG_11753T0 -1 84 84 intron3 Amac gnl|Amac3|AMAG_11753T0 -1 114 114 intron3 Amac gnl|Amac3|AMAG_11753T0 -1 171 171 intron1 Bden lcl|BDEG_08118 -1 28 28 intron3 Bden lcl|BDEG_08118 -1 76 76 intron3 Bflo gi|260800331|ref|XP_002595087.1| -1 40 40 intron3 Bflo gi|260800331|ref|XP_002595087.1| -1 73 73 intron3 Spur gi|115920945|ref|XP_788994.2| -1 51 51 intron3 Spur gi|115920945|ref|XP_788994.2| -1 85 85 intron3 Spur gi|115920945|ref|XP_788994.2| -1 128 128 intron3 Spur gi|115920945|ref|XP_788994.2| -1 185 185 intron1 Pbla gnl|Phybl1|77081 -1 29 29 intron3 Pbla gnl|Phybl1|77081 -1 64 64 intron3 Pbla gnl|Phybl1|77081 -1 77 77 intron3 Pbla gnl|Phybl1|77081 -1 107 107 intron3 Pbla gnl|Phybl1|77081 -1 165 165 intron1 Pram gnl|Phyra1_1|51249 -1 24 24 intron3 Pram gnl|Phyra1_1|51249 -1 54 54 intron3 Psoj gnl|Physo1_1|116026 -1 23 23 intron3 Rory lcl|RO3G_01633 -1 26 26 intron3 Rory lcl|RO3G_01633 -1 39 39 intron3 Rory lcl|RO3G_01633 -1 69 69 intron3 Rory lcl|RO3G_01633 -1 91 91 intron1 Mcir gnl|Mucci2|109115 -1 61 61 intron3 Mcir gnl|Mucci2|109115 -1 74 74 intron3 Mcir gnl|Mucci2|109115 -1 104 104 intron3 Mcir gnl|Mucci2|109115 -1 162 162 intron1