#| ca.umontreal.iro.evolution.introns.WriteIntronTable Tue Apr 12 01:40:57 EDT 2011 #| System: Mac OS X 10.6.7 x86_64 #| Java: Java HotSpot(TM) 64-Bit Server VM 19.1-b02-334 (1.6.0_24-b07-334-10M3326) mixed mode, Apple Inc. #| Current directory: /Users/csuros/Work/introns/larger-data/denovo/census2010/pipeline/3MCMC/HTML #| Arguments: #| Input alignment: alignments/KOG0857.faa #| Intron position list parenthesis: {i .. i} #| Intron positions are relative to: sequence intron1 0,100,200 intron2 0,80,160 intron3 0,50,100 Ptet gi|145479333|ref|XP_001425689.1| -1 47 47 intron3 Ptet gi|145479333|ref|XP_001425689.1| -1 187 187 intron3 Ehux gnl|Emihu1|433874 -1 7 7 intron3 Ehux gnl|Emihu1|433874 -1 28 28 intron1 Tann gi|84995786|ref|XP_952615.1| -1 74 74 intron3 Tann gi|84995786|ref|XP_952615.1| -1 141 141 intron3 Tpar gi|71030040|ref|XP_764662.1| -1 74 74 intron3 Tpar gi|71030040|ref|XP_764662.1| -1 141 141 intron3 Tgon gi|237838029|ref|XP_002368312.1| -1 74 74 intron3 Tgon gi|237838029|ref|XP_002368312.1| -1 107 107 intron1 Tgon gi|237838029|ref|XP_002368312.1| -1 141 141 intron3 Ppat gi|168066470|ref|XP_001785160.1| -1 4 4 intron1 Ppat gi|168066470|ref|XP_001785160.1| -1 171 171 intron2 Ppat gi|168066470|ref|XP_001785160.1| -1 198 198 intron3 Smoe gnl|Selmo1|437527 -1 4 4 intron1 Smoe gnl|Selmo1|437527 -1 110 110 intron2 Smoe gnl|Selmo1|437527 -1 171 171 intron2 Smoe gnl|Selmo1|437527 -1 198 198 intron3 Sbic gi|242038947|ref|XP_002466868.1| -1 4 4 intron1 Sbic gi|242038947|ref|XP_002466868.1| -1 171 171 intron2 Sbic gi|242038947|ref|XP_002466868.1| -1 198 198 intron3 Osat gi|115462319|ref|NP_001054759.1| -1 4 4 intron1 Osat gi|115462319|ref|NP_001054759.1| -1 171 171 intron2 Osat gi|115462319|ref|NP_001054759.1| -1 198 198 intron3 Ddis gi|166240289|ref|XP_636818.2| -1 4 4 intron1 Ddis gi|166240289|ref|XP_636818.2| -1 8 8 intron2 Ddis gi|166240289|ref|XP_636818.2| -1 13 13 intron3 Dpur gnl|Dicpu1|92700 -1 4 4 intron1 Dpur gnl|Dicpu1|92700 -1 8 8 intron2 Dpur gnl|Dicpu1|92700 -1 41 41 intron1 Mbre gi|167517447|ref|XP_001743064.1| -1 110 110 intron2 Prsp lcl|PTSG_03139T0 -1 59 59 intron3 Prsp lcl|PTSG_03139T0 -1 110 110 intron2 Spun lcl|SPPG_04001T0 -1 28 28 intron1 Spun lcl|SPPG_04001T0 -1 110 110 intron2 Bden lcl|BDEG_02615 -1 10 10 intron2 Bden lcl|BDEG_02615 -1 28 28 intron1 Mlar gnl|Mellp1|71817 -1 45 45 intron3 Mlar gnl|Mellp1|71817 -1 170 170 intron3 Mlar gnl|Mellp1|71817 -1 198 198 intron3 Pgra lcl|PGTG_02196 -1 45 45 intron3 Pgra lcl|PGTG_02196 -1 170 170 intron3 Pgra lcl|PGTG_02196 -1 198 198 intron3 Umay gi|71018477|ref|XP_759469.1| -1 14 14 intron2 Umay gi|71018477|ref|XP_759469.1| -1 28 28 intron2 Umay gi|71018477|ref|XP_759469.1| -1 44 44 intron1 Umay gi|71018477|ref|XP_759469.1| -1 76 76 intron3 Cneo gi|134108304|ref|XP_777103.1| -1 16 16 intron2 Cneo gi|134108304|ref|XP_777103.1| -1 131 131 intron2 Cneo gi|134108304|ref|XP_777103.1| -1 198 198 intron3 Fchr gnl|Phchr1|136318 -1 30 30 intron3 Fchr gnl|Phchr1|136318 -1 110 110 intron2 Fchr gnl|Phchr1|136318 -1 192 192 intron2 Fchr gnl|Phchr1|136318 -1 211 211 intron3 Abis gnl|Agabi_varbisH97_2|137621 -1 30 30 intron3 Abis gnl|Agabi_varbisH97_2|137621 -1 110 110 intron2 Abis gnl|Agabi_varbisH97_2|137621 -1 192 192 intron2 Ccin gi|169851943|ref|XP_001832660.1| -1 30 30 intron3 Ccin gi|169851943|ref|XP_001832660.1| -1 110 110 intron2 Ccin gi|169851943|ref|XP_001832660.1| -1 192 192 intron2 Lbic gnl|Lacbi1|192765 -1 30 30 intron3 Lbic gnl|Lacbi1|192765 -1 110 110 intron2 Lbic gnl|Lacbi1|192765 -1 192 192 intron2 Mfij gnl|Mycfi1|88005 -1 16 16 intron2 Mfij gnl|Mycfi1|88005 -1 22 22 intron3 Mfij gnl|Mycfi1|88005 -1 74 74 intron2 Mfij gnl|Mycfi1|88005 -1 144 144 intron1 Mgra gnl|Mycgr3|73310 -1 74 74 intron2 Mgra gnl|Mycgr3|73310 -1 144 144 intron1 Bfuc gi|154302810|ref|XP_001551814.1| -1 15 15 intron3 Bfuc gi|154302810|ref|XP_001551814.1| -1 74 74 intron2 Bfuc gi|154302810|ref|XP_001551814.1| -1 144 144 intron1 Sscl gi|156056300|ref|XP_001594074.1| -1 15 15 intron3 Sscl gi|156056300|ref|XP_001594074.1| -1 74 74 intron2 Sscl gi|156056300|ref|XP_001594074.1| -1 144 144 intron1 Gzea gi|46137461|ref|XP_390422.1| -1 15 15 intron3 Gzea gi|46137461|ref|XP_390422.1| -1 144 144 intron1 Ncra gi|85099431|ref|XP_960786.1| -1 15 15 intron3 Ncra gi|85099431|ref|XP_960786.1| -1 144 144 intron1 Mgri gi|39942112|ref|XP_360593.1| -1 15 15 intron3 Mgri gi|39942112|ref|XP_360593.1| -1 74 74 intron2 Mgri gi|39942112|ref|XP_360593.1| -1 144 144 intron1 Anid gi|67539826|ref|XP_663687.1| -1 15 15 intron3 Cimm gi|119193312|ref|XP_001247262.1| -1 15 15 intron3 Cimm gi|119193312|ref|XP_001247262.1| -1 74 74 intron2 Uree gi|258574561|ref|XP_002541462.1| -1 15 15 intron3 Uree gi|258574561|ref|XP_002541462.1| -1 74 74 intron2 Pnod gi|169600623|ref|XP_001793734.1| -1 72 72 intron3 Chet gnl|CocheC5_1|26036 -1 16 16 intron3 Chet gnl|CocheC5_1|26036 -1 158 158 intron3 Prep gi|189191718|ref|XP_001932198.1| -1 16 16 intron3 Prep gi|189191718|ref|XP_001932198.1| -1 158 158 intron3 Bmal gi|170587060|ref|XP_001898297.1| -1 66 66 intron3 Bmal gi|170587060|ref|XP_001898297.1| -1 143 143 intron3 Cbri gi|268530364|ref|XP_002630308.1| -1 82 82 intron3 Cbri gi|268530364|ref|XP_002630308.1| -1 143 143 intron3 Cele gi|17533037|ref|NP_495707.1| -1 82 82 intron3 Cele gi|17533037|ref|NP_495707.1| -1 143 143 intron3 Tadh gi|195998652|ref|XP_002109194.1| -1 8 8 intron2 Tadh gi|195998652|ref|XP_002109194.1| -1 28 28 intron1 Tadh gi|195998652|ref|XP_002109194.1| -1 110 110 intron2 Tadh gi|195998652|ref|XP_002109194.1| -1 164 164 intron3 Hmag gi|221117576|ref|XP_002161791.1| -1 8 8 intron2 Hmag gi|221117576|ref|XP_002161791.1| -1 28 28 intron1 Hmag gi|221117576|ref|XP_002161791.1| -1 164 164 intron3 Sman gi|256072944|ref|XP_002572793.1| -1 8 8 intron2 Sman gi|256072944|ref|XP_002572793.1| -1 110 110 intron2 Sman gi|256072944|ref|XP_002572793.1| -1 164 164 intron3 Bflo gi|260801787|ref|XP_002595777.1| -1 8 8 intron2 Bflo gi|260801787|ref|XP_002595777.1| -1 28 28 intron1 Bflo gi|260801787|ref|XP_002595777.1| -1 59 59 intron3 Bflo gi|260801787|ref|XP_002595777.1| -1 110 110 intron2 Bflo gi|260801787|ref|XP_002595777.1| -1 164 164 intron3 Nvec gi|156404264|ref|XP_001640327.1| -1 8 8 intron2 Nvec gi|156404264|ref|XP_001640327.1| -1 110 110 intron2 Nvec gi|156404264|ref|XP_001640327.1| -1 164 164 intron3 Hsap gi|5174431|ref|NP_006004.1| -1 8 8 intron2 Hsap gi|5174431|ref|NP_006004.1| -1 28 28 intron1 Hsap gi|5174431|ref|NP_006004.1| -1 64 64 intron1 Hsap gi|5174431|ref|NP_006004.1| -1 110 110 intron2 Hsap gi|5174431|ref|NP_006004.1| -1 164 164 intron3 Drer gi|41053337|ref|NP_956321.1| -1 8 8 intron2 Drer gi|41053337|ref|NP_956321.1| -1 28 28 intron1 Drer gi|41053337|ref|NP_956321.1| -1 64 64 intron1 Drer gi|41053337|ref|NP_956321.1| -1 110 110 intron2 Drer gi|41053337|ref|NP_956321.1| -1 164 164 intron3 Dpul gnl|Dappu1|231299 -1 8 8 intron2 Dpul gnl|Dappu1|231299 -1 74 74 intron3 Dpul gnl|Dappu1|231299 -1 110 110 intron2 Dpul gnl|Dappu1|231299 -1 164 164 intron3 Aaeg gi|157129707|ref|XP_001655466.1| -1 8 8 intron2 Aaeg gi|157129707|ref|XP_001655466.1| -1 110 110 intron2 Aaeg gi|157129707|ref|XP_001655466.1| -1 164 164 intron3 Agam gi|118779234|ref|XP_560169.2| -1 8 8 intron2 Agam gi|118779234|ref|XP_560169.2| -1 110 110 intron2 Dmel gi|221513696|ref|NP_730773.4| -1 8 8 intron2 Dmel gi|221513696|ref|NP_730773.4| -1 110 110 intron2 Dmel gi|221513696|ref|NP_730773.4| -1 164 164 intron3 Dmoj gi|195107102|ref|XP_001998155.1| -1 8 8 intron2 Dmoj gi|195107102|ref|XP_001998155.1| -1 110 110 intron2 Dmoj gi|195107102|ref|XP_001998155.1| -1 164 164 intron3 Tcas gi|91090105|ref|XP_970875.1| -1 8 8 intron2 Tcas gi|91090105|ref|XP_970875.1| -1 110 110 intron2 Bmor gnl|Bmor|BGIBMGA002811-PA -1 8 8 intron2 Bmor gnl|Bmor|BGIBMGA002811-PA -1 110 110 intron2 Bmor gnl|Bmor|BGIBMGA002811-PA -1 164 164 intron3 Phum gi|242009032|ref|XP_002425297.1| -1 164 164 intron3 Amel gi|48107653|ref|XP_393092.1| -1 8 8 intron2 Amel gi|48107653|ref|XP_393092.1| -1 110 110 intron2 Nvit gi|156543989|ref|XP_001606758.1| -1 8 8 intron2 Nvit gi|156543989|ref|XP_001606758.1| -1 74 74 intron2 Nvit gi|156543989|ref|XP_001606758.1| -1 86 86 intron2 Lgig gnl|Lotgi1|229535 -1 8 8 intron2 Lgig gnl|Lotgi1|229535 -1 28 28 intron1 Lgig gnl|Lotgi1|229535 -1 110 110 intron2 Lgig gnl|Lotgi1|229535 -1 164 164 intron3 Spur gi|72124473|ref|XP_787854.1| -1 8 8 intron2 Spur gi|72124473|ref|XP_787854.1| -1 28 28 intron1 Spur gi|72124473|ref|XP_787854.1| -1 110 110 intron2 Spur gi|72124473|ref|XP_787854.1| -1 164 164 intron3 CspI gnl|Capca1|218942 -1 8 8 intron2 CspI gnl|Capca1|218942 -1 28 28 intron1 CspI gnl|Capca1|218942 -1 110 110 intron2 Isca gi|241111167|ref|XP_002399224.1| -1 8 8 intron2 Isca gi|241111167|ref|XP_002399224.1| -1 28 28 intron1 Isca gi|241111167|ref|XP_002399224.1| -1 110 110 intron2 Hrob gnl|Helro1|186175 -1 8 8 intron2 Hrob gnl|Helro1|186175 -1 28 28 intron1 Hrob gnl|Helro1|186175 -1 110 110 intron2 Hrob gnl|Helro1|186175 -1 164 164 intron3