#| ca.umontreal.iro.evolution.introns.WriteIntronTable Tue Apr 12 01:40:57 EDT 2011 #| System: Mac OS X 10.6.7 x86_64 #| Java: Java HotSpot(TM) 64-Bit Server VM 19.1-b02-334 (1.6.0_24-b07-334-10M3326) mixed mode, Apple Inc. #| Current directory: /Users/csuros/Work/introns/larger-data/denovo/census2010/pipeline/3MCMC/HTML #| Arguments: #| Input alignment: alignments/KOG0861.faa #| Intron position list parenthesis: {i .. i} #| Intron positions are relative to: sequence intron1 0,100,200 intron2 0,80,160 intron3 0,50,100 Pviv gi|156097220|ref|XP_001614643.1| -1 26 26 intron2 Pviv gi|156097220|ref|XP_001614643.1| -1 49 49 intron3 Pviv gi|156097220|ref|XP_001614643.1| -1 87 87 intron2 Pviv gi|156097220|ref|XP_001614643.1| -1 130 130 intron3 Pviv gi|156097220|ref|XP_001614643.1| -1 149 149 intron3 Pviv gi|156097220|ref|XP_001614643.1| -1 178 178 intron1 Pfal gi|124506761|ref|XP_001351978.1| -1 26 26 intron2 Pfal gi|124506761|ref|XP_001351978.1| -1 49 49 intron3 Pfal gi|124506761|ref|XP_001351978.1| -1 87 87 intron2 Pfal gi|124506761|ref|XP_001351978.1| -1 130 130 intron3 Pfal gi|124506761|ref|XP_001351978.1| -1 149 149 intron3 Pfal gi|124506761|ref|XP_001351978.1| -1 178 178 intron1 Ehis gi|67479709|ref|XP_655236.1| -1 86 86 intron3 Edis gi|167392346|ref|XP_001740114.1| -1 86 86 intron3 Cowc lcl|CAOG_04776T0 -1 35 35 intron2 Cowc lcl|CAOG_04776T0 -1 63 63 intron1 Cowc lcl|CAOG_04776T0 -1 153 153 intron3 Atha gi|15242973|ref|NP_200626.1| -1 67 67 intron1 Atha gi|15242973|ref|NP_200626.1| -1 99 99 intron3 Atha gi|15242973|ref|NP_200626.1| -1 132 132 intron3 Atha gi|15242973|ref|NP_200626.1| -1 154 154 intron3 Atha gi|15242973|ref|NP_200626.1| -1 183 183 intron3 Vvin gi|225450403|ref|XP_002278554.1| -1 65 65 intron1 Vvin gi|225450403|ref|XP_002278554.1| -1 97 97 intron3 Vvin gi|225450403|ref|XP_002278554.1| -1 132 132 intron3 Vvin gi|225450403|ref|XP_002278554.1| -1 154 154 intron3 Vvin gi|225450403|ref|XP_002278554.1| -1 183 183 intron3 Sbic gi|242060021|ref|XP_002459156.1| -1 72 72 intron1 Sbic gi|242060021|ref|XP_002459156.1| -1 104 104 intron3 Sbic gi|242060021|ref|XP_002459156.1| -1 139 139 intron3 Sbic gi|242060021|ref|XP_002459156.1| -1 161 161 intron3 Sbic gi|242060021|ref|XP_002459156.1| -1 190 190 intron3 Osat gi|115442419|ref|NP_001045489.1| -1 80 80 intron1 Osat gi|115442419|ref|NP_001045489.1| -1 112 112 intron3 Osat gi|115442419|ref|NP_001045489.1| -1 147 147 intron3 Osat gi|115442419|ref|NP_001045489.1| -1 169 169 intron3 Osat gi|115442419|ref|NP_001045489.1| -1 198 198 intron3 Crei gi|159478166|ref|XP_001697175.1| -1 135 135 intron3 Vcar gnl|Volca1|75062 -1 135 135 intron3 C169 gnl|Coc_C169_1|53752 -1 75 75 intron3 C169 gnl|Coc_C169_1|53752 -1 131 131 intron3 Sman gi|256079578|ref|XP_002576063.1| -1 20 20 intron1 Sman gi|256079578|ref|XP_002576063.1| -1 93 93 intron1 Sman gi|256079578|ref|XP_002576063.1| -1 126 126 intron3 Sman gi|256079578|ref|XP_002576063.1| -1 146 146 intron2 Sman gi|256079578|ref|XP_002576063.1| -1 183 183 intron3 Sman gi|256079578|ref|XP_002576063.1| -1 217 217 intron3 Cint gi|198436318|ref|XP_002128659.1| -1 36 36 intron2 Cint gi|198436318|ref|XP_002128659.1| -1 97 97 intron3 Cint gi|198436318|ref|XP_002128659.1| -1 117 117 intron2 Cint gi|198436318|ref|XP_002128659.1| -1 154 154 intron3 Cint gi|198436318|ref|XP_002128659.1| -1 188 188 intron3 Ehux gnl|Emihu1|460762 -1 2 2 intron3 Ehux gnl|Emihu1|460762 -1 29 29 intron3 Isca gi|241122295|ref|XP_002403515.1| -1 36 36 intron2 Isca gi|241122295|ref|XP_002403515.1| -1 64 64 intron1 Isca gi|241122295|ref|XP_002403515.1| -1 97 97 intron3 Bden lcl|BDEG_04696 -1 34 34 intron2 Bden lcl|BDEG_04696 -1 62 62 intron1 Bden lcl|BDEG_04696 -1 154 154 intron3 Spun lcl|SPPG_02105T0 -1 35 35 intron2 Spun lcl|SPPG_02105T0 -1 63 63 intron1 Spun lcl|SPPG_02105T0 -1 156 156 intron3 Spun lcl|SPPG_02105T0 -1 198 198 intron3 Tadh gi|196013837|ref|XP_002116779.1| -1 34 34 intron2 Tadh gi|196013837|ref|XP_002116779.1| -1 62 62 intron1 Tadh gi|196013837|ref|XP_002116779.1| -1 95 95 intron3 Tadh gi|196013837|ref|XP_002116779.1| -1 112 112 intron2 Tadh gi|196013837|ref|XP_002116779.1| -1 127 127 intron3 Tadh gi|196013837|ref|XP_002116779.1| -1 149 149 intron3 Tadh gi|196013837|ref|XP_002116779.1| -1 183 183 intron3 Hmag gi|221122855|ref|XP_002155852.1| -1 35 35 intron2 Hmag gi|221122855|ref|XP_002155852.1| -1 63 63 intron1 Hmag gi|221122855|ref|XP_002155852.1| -1 96 96 intron3 Hmag gi|221122855|ref|XP_002155852.1| -1 108 108 intron2 Hmag gi|221122855|ref|XP_002155852.1| -1 123 123 intron3 Hmag gi|221122855|ref|XP_002155852.1| -1 145 145 intron3 Hmag gi|221122855|ref|XP_002155852.1| -1 179 179 intron3 Spur gi|115608248|ref|XP_779975.2| -1 35 35 intron2 Spur gi|115608248|ref|XP_779975.2| -1 63 63 intron1 Spur gi|115608248|ref|XP_779975.2| -1 96 96 intron3 Spur gi|115608248|ref|XP_779975.2| -1 131 131 intron3 Spur gi|115608248|ref|XP_779975.2| -1 153 153 intron3 Spur gi|115608248|ref|XP_779975.2| -1 189 189 intron1 Spur gi|115608248|ref|XP_779975.2| -1 194 194 intron3 Dpul gnl|Dappu1|304483 -1 65 65 intron1 Dpul gnl|Dappu1|304483 -1 98 98 intron3 Nvec gi|156353992|ref|XP_001623189.1| -1 34 34 intron2 Nvec gi|156353992|ref|XP_001623189.1| -1 62 62 intron1 Nvec gi|156353992|ref|XP_001623189.1| -1 95 95 intron3 Nvec gi|156353992|ref|XP_001623189.1| -1 115 115 intron2 Lgig gnl|Lotgi1|206537 -1 36 36 intron2 Lgig gnl|Lotgi1|206537 -1 97 97 intron3 Lgig gnl|Lotgi1|206537 -1 117 117 intron2 Lgig gnl|Lotgi1|206537 -1 132 132 intron3 Lgig gnl|Lotgi1|206537 -1 154 154 intron3 CspI gnl|Capca1|183405 -1 36 36 intron2 CspI gnl|Capca1|183405 -1 64 64 intron1 CspI gnl|Capca1|183405 -1 97 97 intron3 CspI gnl|Capca1|183405 -1 154 154 intron3 CspI gnl|Capca1|183405 -1 188 188 intron3 Hrob gnl|Helro1|185407 -1 36 36 intron2 Hrob gnl|Helro1|185407 -1 64 64 intron1 Hrob gnl|Helro1|185407 -1 97 97 intron3 Hrob gnl|Helro1|185407 -1 117 117 intron2 Hrob gnl|Helro1|185407 -1 132 132 intron3 Hrob gnl|Helro1|185407 -1 154 154 intron3 Hrob gnl|Helro1|185407 -1 188 188 intron3 Phum gi|242016089|ref|XP_002428668.1| -1 83 83 intron1 Phum gi|242016089|ref|XP_002428668.1| -1 154 154 intron3 Agam gi|58380681|ref|XP_310711.2| -1 42 42 intron2 Dmel gi|18858025|ref|NP_572423.1| -1 42 42 intron2 Dmoj gi|195132293|ref|XP_002010578.1| -1 42 42 intron2 Apis gi|193676346|ref|XP_001952160.1| -1 64 64 intron1 Apis gi|193676346|ref|XP_001952160.1| -1 97 97 intron3 Apis gi|193676346|ref|XP_001952160.1| -1 154 154 intron3 Amel gi|66558726|ref|XP_624934.1| -1 64 64 intron1 Amel gi|66558726|ref|XP_624934.1| -1 154 154 intron3 Nvit gi|156541401|ref|XP_001600708.1| -1 64 64 intron1 Tcas gi|91083639|ref|XP_970664.1| -1 64 64 intron1 Bflo gi|260828351|ref|XP_002609127.1| -1 35 35 intron2 Bflo gi|260828351|ref|XP_002609127.1| -1 63 63 intron1 Bflo gi|260828351|ref|XP_002609127.1| -1 96 96 intron3 Bflo gi|260828351|ref|XP_002609127.1| -1 116 116 intron2 Tgut gi|224080712|ref|XP_002192114.1| -1 35 35 intron2 Tgut gi|224080712|ref|XP_002192114.1| -1 63 63 intron1 Tgut gi|224080712|ref|XP_002192114.1| -1 96 96 intron3 Tgut gi|224080712|ref|XP_002192114.1| -1 145 145 intron3 Drer gi|125828504|ref|XP_702451.2| -1 35 35 intron2 Drer gi|125828504|ref|XP_702451.2| -1 63 63 intron1 Drer gi|125828504|ref|XP_702451.2| -1 96 96 intron3 Hsap gi|5730120|ref|NP_006546.1| -1 35 35 intron2 Hsap gi|5730120|ref|NP_006546.1| -1 63 63 intron1 Hsap gi|5730120|ref|NP_006546.1| -1 96 96 intron3 Mbre gi|167526401|ref|XP_001747534.1| -1 35 35 intron2 Mbre gi|167526401|ref|XP_001747534.1| -1 60 60 intron3 Mbre gi|167526401|ref|XP_001747534.1| -1 115 115 intron2 Mbre gi|167526401|ref|XP_001747534.1| -1 152 152 intron3 Amac lcl|AMAG_11261T0 -1 34 34 intron2 Amac lcl|AMAG_11261T0 -1 62 62 intron1 Amac lcl|AMAG_11261T0 -1 155 155 intron3 Umay gi|71006236|ref|XP_757784.1| -1 46 46 intron3 Pbla gnl|Phybl1|36116 -1 35 35 intron2 Pbla gnl|Phybl1|36116 -1 63 63 intron1 Pbla gnl|Phybl1|36116 -1 147 147 intron3 Pbla gnl|Phybl1|36116 -1 160 160 intron3 Mcir gnl|Mucci2|71435 -1 35 35 intron2 Mcir gnl|Mucci2|71435 -1 63 63 intron1 Mcir gnl|Mucci2|71435 -1 151 151 intron3 Mcir gnl|Mucci2|71435 -1 164 164 intron3 Rory lcl|RO3G_01050 -1 35 35 intron2 Rory lcl|RO3G_01050 -1 63 63 intron1 Rory lcl|RO3G_01050 -1 149 149 intron3 Rory lcl|RO3G_01050 -1 162 162 intron3 Sjap gi|213402791|ref|XP_002172168.1| -1 35 35 intron2 Spom gi|19113353|ref|NP_596561.1| -1 35 35 intron2 Cneo gi|58260750|ref|XP_567785.1| -1 48 48 intron3 Cneo gi|58260750|ref|XP_567785.1| -1 86 86 intron1 Cneo gi|58260750|ref|XP_567785.1| -1 188 188 intron3 Cneo gi|58260750|ref|XP_567785.1| -1 225 225 intron3 Sros gnl|Sporo1|11914 -1 36 36 intron2 Sros gnl|Sporo1|11914 -1 166 166 intron1 Sros gnl|Sporo1|11914 -1 167 167 intron3 Sros gnl|Sporo1|11914 -1 204 204 intron3 Ccin gi|169856736|ref|XP_001835022.1| -1 80 80 intron1 Ccin gi|169856736|ref|XP_001835022.1| -1 154 154 intron3 Ccin gi|169856736|ref|XP_001835022.1| -1 191 191 intron3 Fchr gnl|Phchr1|138514 -1 80 80 intron1 Fchr gnl|Phchr1|138514 -1 154 154 intron3 Fchr gnl|Phchr1|138514 -1 191 191 intron3 Fchr gnl|Phchr1|138514 -1 199 199 intron3 Abis gnl|Agabi_varbisH97_2|195361 -1 80 80 intron1 Abis gnl|Agabi_varbisH97_2|195361 -1 154 154 intron3 Abis gnl|Agabi_varbisH97_2|195361 -1 191 191 intron3 Lbic gnl|Lacbi1|175425 -1 80 80 intron1 Lbic gnl|Lacbi1|175425 -1 154 154 intron3 Lbic gnl|Lacbi1|175425 -1 191 191 intron3 Pgra lcl|PGTG_04325 -1 19 19 intron1 Pgra lcl|PGTG_04325 -1 38 38 intron2 Pgra lcl|PGTG_04325 -1 162 162 intron3 Pgra lcl|PGTG_04325 -1 201 201 intron3 Mlar gnl|Mellp1|116460 -1 19 19 intron1 Mlar gnl|Mellp1|116460 -1 38 38 intron2 Mlar gnl|Mellp1|116460 -1 165 165 intron3 Mlar gnl|Mellp1|116460 -1 204 204 intron3 Ncra gi|164423107|ref|XP_959001.2| -1 7 7 intron3 Ncra gi|164423107|ref|XP_959001.2| -1 63 63 intron1 Ncra gi|164423107|ref|XP_959001.2| -1 159 159 intron3 Anid gi|67903002|ref|XP_681757.1| -1 7 7 intron3 Anid gi|67903002|ref|XP_681757.1| -1 63 63 intron1 Anid gi|67903002|ref|XP_681757.1| -1 158 158 intron3 Gzea gi|46124033|ref|XP_386570.1| -1 7 7 intron3 Gzea gi|46124033|ref|XP_386570.1| -1 35 35 intron2 Gzea gi|46124033|ref|XP_386570.1| -1 63 63 intron1 Gzea gi|46124033|ref|XP_386570.1| -1 185 185 intron1 Mgri gi|145603322|ref|XP_369339.2| -1 7 7 intron3 Mgri gi|145603322|ref|XP_369339.2| -1 35 35 intron2 Mgri gi|145603322|ref|XP_369339.2| -1 52 52 intron3 Mgri gi|145603322|ref|XP_369339.2| -1 63 63 intron1 Mgri gi|145603322|ref|XP_369339.2| -1 185 185 intron1 Bfuc gi|154294031|ref|XP_001547459.1| -1 7 7 intron3 Bfuc gi|154294031|ref|XP_001547459.1| -1 35 35 intron2 Bfuc gi|154294031|ref|XP_001547459.1| -1 63 63 intron1 Bfuc gi|154294031|ref|XP_001547459.1| -1 185 185 intron1 Sscl gi|156035733|ref|XP_001585978.1| -1 7 7 intron3 Sscl gi|156035733|ref|XP_001585978.1| -1 35 35 intron2 Sscl gi|156035733|ref|XP_001585978.1| -1 63 63 intron1 Sscl gi|156035733|ref|XP_001585978.1| -1 185 185 intron1 Cimm gi|119180558|ref|XP_001241738.1| -1 7 7 intron3 Cimm gi|119180558|ref|XP_001241738.1| -1 35 35 intron2 Uree gi|258578217|ref|XP_002543290.1| -1 19 19 intron2 Prep gi|189204464|ref|XP_001938567.1| -1 7 7 intron3 Prep gi|189204464|ref|XP_001938567.1| -1 39 39 intron3 Prep gi|189204464|ref|XP_001938567.1| -1 63 63 intron1 Prep gi|189204464|ref|XP_001938567.1| -1 185 185 intron3 Mfij gnl|Mycfi1|51198 -1 7 7 intron3 Mfij gnl|Mycfi1|51198 -1 140 140 intron3 Mgra gnl|Mycgr3|67881 -1 7 7 intron3 Mgra gnl|Mycgr3|67881 -1 140 140 intron3 Pnod gi|169598620|ref|XP_001792733.1| -1 132 132 intron3 Chet gnl|CocheC5_1|114760 -1 7 7 intron3 Chet gnl|CocheC5_1|114760 -1 39 39 intron3 Chet gnl|CocheC5_1|114760 -1 63 63 intron1 Chet gnl|CocheC5_1|114760 -1 189 189 intron3 Pcap gnl|PhycaF7|29014 -1 7 7 intron1 Pcap gnl|PhycaF7|29014 -1 37 37 intron2 Pcap gnl|PhycaF7|29014 -1 108 108 intron2 Pram gnl|Phyra1_1|72366 -1 7 7 intron1 Pram gnl|Phyra1_1|72366 -1 37 37 intron2 Pram gnl|Phyra1_1|72366 -1 108 108 intron2 Psoj gnl|Physo1_1|109313 -1 7 7 intron1 Psoj gnl|Physo1_1|109313 -1 37 37 intron2 Psoj gnl|Physo1_1|109313 -1 108 108 intron2 Fcyl gnl|Fracy1|178393 -1 36 36 intron3 Ftri gi|219123449|ref|XP_002182037.1| -1 36 36 intron3