#| ca.umontreal.iro.evolution.introns.WriteIntronTable Tue Apr 12 01:40:58 EDT 2011 #| System: Mac OS X 10.6.7 x86_64 #| Java: Java HotSpot(TM) 64-Bit Server VM 19.1-b02-334 (1.6.0_24-b07-334-10M3326) mixed mode, Apple Inc. #| Current directory: /Users/csuros/Work/introns/larger-data/denovo/census2010/pipeline/3MCMC/HTML #| Arguments: #| Input alignment: alignments/KOG0875.faa #| Intron position list parenthesis: {i .. i} #| Intron positions are relative to: sequence intron1 0,100,200 intron2 0,80,160 intron3 0,50,100 Ptet gi|145487326|ref|XP_001429668.1| -1 129 129 intron2 Ptet gi|145487326|ref|XP_001429668.1| -1 237 237 intron3 Tthe gi|118356685|ref|XP_001011598.1| -1 13 13 intron3 Tthe gi|118356685|ref|XP_001011598.1| -1 185 185 intron3 Tthe gi|118356685|ref|XP_001011598.1| -1 314 314 intron1 Tgon gi|237841149|ref|XP_002369872.1| -1 25 25 intron1 Tgon gi|237841149|ref|XP_002369872.1| -1 155 155 intron1 Tgon gi|237841149|ref|XP_002369872.1| -1 299 299 intron3 Bbov gi|156089549|ref|XP_001612181.1| -1 25 25 intron1 Bbov gi|156089549|ref|XP_001612181.1| -1 299 299 intron3 Tann gi|84995804|ref|XP_952624.1| -1 25 25 intron1 Tann gi|84995804|ref|XP_952624.1| -1 298 298 intron3 Tpar gi|71030018|ref|XP_764651.1| -1 25 25 intron1 Tpar gi|71030018|ref|XP_764651.1| -1 298 298 intron3 Pyoe gi|82705794|ref|XP_727116.1| -1 25 25 intron1 Pfal gi|124808771|ref|XP_001348404.1| -1 25 25 intron1 Pfal gi|124808771|ref|XP_001348404.1| -1 285 285 intron3 Pviv gi|156102056|ref|XP_001616721.1| -1 25 25 intron1 Pviv gi|156102056|ref|XP_001616721.1| -1 286 286 intron3 Fcyl gnl|Fracy1|208522 -1 1 1 intron3 Ftri gi|219109995|ref|XP_002176750.1| -1 1 1 intron3 Tpse gi|224011241|ref|XP_002295395.1| -1 1 1 intron3 Smoe gnl|Selmo1|144921 -1 1 1 intron3 Smoe gnl|Selmo1|144921 -1 25 25 intron1 Smoe gnl|Selmo1|144921 -1 55 55 intron3 Smoe gnl|Selmo1|144921 -1 98 98 intron1 Smoe gnl|Selmo1|144921 -1 124 124 intron3 Smoe gnl|Selmo1|144921 -1 164 164 intron3 Smoe gnl|Selmo1|144921 -1 209 209 intron3 Smoe gnl|Selmo1|144921 -1 267 267 intron2 Ppat gi|168063319|ref|XP_001783620.1| -1 1 1 intron3 Ppat gi|168063319|ref|XP_001783620.1| -1 25 25 intron1 Ppat gi|168063319|ref|XP_001783620.1| -1 55 55 intron3 Ppat gi|168063319|ref|XP_001783620.1| -1 98 98 intron1 Ppat gi|168063319|ref|XP_001783620.1| -1 124 124 intron3 Ppat gi|168063319|ref|XP_001783620.1| -1 163 163 intron3 Ppat gi|168063319|ref|XP_001783620.1| -1 208 208 intron3 Ppat gi|168063319|ref|XP_001783620.1| -1 265 265 intron2 Atha gi|18404552|ref|NP_566767.1| -1 1 1 intron3 Atha gi|18404552|ref|NP_566767.1| -1 25 25 intron1 Atha gi|18404552|ref|NP_566767.1| -1 98 98 intron1 Atha gi|18404552|ref|NP_566767.1| -1 124 124 intron3 Atha gi|18404552|ref|NP_566767.1| -1 163 163 intron3 Atha gi|18404552|ref|NP_566767.1| -1 265 265 intron2 Vvin gi|225468097|ref|XP_002265940.1| -1 1 1 intron3 Vvin gi|225468097|ref|XP_002265940.1| -1 25 25 intron1 Vvin gi|225468097|ref|XP_002265940.1| -1 55 55 intron3 Vvin gi|225468097|ref|XP_002265940.1| -1 98 98 intron1 Vvin gi|225468097|ref|XP_002265940.1| -1 124 124 intron3 Vvin gi|225468097|ref|XP_002265940.1| -1 163 163 intron3 Vvin gi|225468097|ref|XP_002265940.1| -1 208 208 intron3 Vvin gi|225468097|ref|XP_002265940.1| -1 265 265 intron2 Sbic gi|242037055|ref|XP_002465922.1| -1 2 2 intron3 Sbic gi|242037055|ref|XP_002465922.1| -1 27 27 intron1 Sbic gi|242037055|ref|XP_002465922.1| -1 57 57 intron3 Sbic gi|242037055|ref|XP_002465922.1| -1 100 100 intron1 Sbic gi|242037055|ref|XP_002465922.1| -1 126 126 intron3 Sbic gi|242037055|ref|XP_002465922.1| -1 165 165 intron3 Sbic gi|242037055|ref|XP_002465922.1| -1 210 210 intron3 Sbic gi|242037055|ref|XP_002465922.1| -1 267 267 intron2 Osat gi|115441607|ref|NP_001045083.1| -1 1 1 intron3 Osat gi|115441607|ref|NP_001045083.1| -1 26 26 intron1 Osat gi|115441607|ref|NP_001045083.1| -1 56 56 intron3 Osat gi|115441607|ref|NP_001045083.1| -1 99 99 intron1 Osat gi|115441607|ref|NP_001045083.1| -1 125 125 intron3 Osat gi|115441607|ref|NP_001045083.1| -1 164 164 intron3 Osat gi|115441607|ref|NP_001045083.1| -1 209 209 intron3 Osat gi|115441607|ref|NP_001045083.1| -1 266 266 intron2 Ddis gi|66816906|ref|XP_642429.1| -1 1 1 intron3 Dpur gnl|Dicpu1|52175 -1 1 1 intron3 Ehux gnl|Emihu1|434648 -1 1 1 intron3 Ehux gnl|Emihu1|434648 -1 58 58 intron3 Ehux gnl|Emihu1|434648 -1 157 157 intron3 Ehux gnl|Emihu1|434648 -1 177 177 intron3 Pnod gi|169614528|ref|XP_001800680.1| -1 35 35 intron2 Chet gnl|CocheC5_1|24638 -1 3 3 intron3 Chet gnl|CocheC5_1|24638 -1 28 28 intron1 Chet gnl|CocheC5_1|24638 -1 79 79 intron2 Prep gi|189207733|ref|XP_001940200.1| -1 3 3 intron3 Prep gi|189207733|ref|XP_001940200.1| -1 28 28 intron1 Prep gi|189207733|ref|XP_001940200.1| -1 79 79 intron2 Mfij gnl|Mycfi1|54807 -1 3 3 intron3 Mfij gnl|Mycfi1|54807 -1 14 14 intron2 Mgra gnl|Mycgr3|102365 -1 5 5 intron3 Mgra gnl|Mycgr3|102365 -1 14 14 intron2 Anid gi|67517624|ref|XP_658617.1| -1 1 1 intron3 Anid gi|67517624|ref|XP_658617.1| -1 15 15 intron2 Cimm gi|119181612|ref|XP_001242010.1| -1 1 1 intron3 Cimm gi|119181612|ref|XP_001242010.1| -1 14 14 intron2 Uree gi|258572322|ref|XP_002544923.1| -1 1 1 intron3 Uree gi|258572322|ref|XP_002544923.1| -1 10 10 intron2 Bfuc gi|154294907|ref|XP_001547892.1| -1 1 1 intron3 Bfuc gi|154294907|ref|XP_001547892.1| -1 14 14 intron2 Sscl gi|156044424|ref|XP_001588768.1| -1 1 1 intron3 Sscl gi|156044424|ref|XP_001588768.1| -1 14 14 intron2 Gzea gi|46136989|ref|XP_390186.1| -1 1 1 intron3 Gzea gi|46136989|ref|XP_390186.1| -1 13 13 intron2 Mgri gi|39971465|ref|XP_367123.1| -1 1 1 intron3 Mgri gi|39971465|ref|XP_367123.1| -1 14 14 intron2 Ncra gi|85098188|ref|XP_960578.1| -1 1 1 intron3 Ncra gi|85098188|ref|XP_960578.1| -1 14 14 intron2 Pbla gnl|Phybl1|32535 -1 1 1 intron3 Pbla gnl|Phybl1|32535 -1 25 25 intron1 Rory lcl|RO3G_14270 -1 1 1 intron3 Rory lcl|RO3G_14270 -1 25 25 intron1 Mcir gnl|Mucci2|157436 -1 1 1 intron3 Mcir gnl|Mucci2|157436 -1 25 25 intron1 Sros gnl|Sporo1|10157 -1 51 51 intron3 Sros gnl|Sporo1|10157 -1 184 184 intron3 Sros gnl|Sporo1|10157 -1 209 209 intron3 Sros gnl|Sporo1|10157 -1 229 229 intron2 Mlar gnl|Mellp1|41926 -1 25 25 intron1 Mlar gnl|Mellp1|41926 -1 217 217 intron3 Pgra lcl|PGTG_16403 -1 43 43 intron1 Pgra lcl|PGTG_16403 -1 59 59 intron3 Pgra lcl|PGTG_16403 -1 84 84 intron1 Pgra lcl|PGTG_16403 -1 276 276 intron3 Cneo gi|58265154|ref|XP_569733.1| -1 12 12 intron3 Cneo gi|58265154|ref|XP_569733.1| -1 48 48 intron3 Cneo gi|58265154|ref|XP_569733.1| -1 70 70 intron3 Cneo gi|58265154|ref|XP_569733.1| -1 219 219 intron2 Ccin gi|169861151|ref|XP_001837210.1| -1 30 30 intron1 Ccin gi|169861151|ref|XP_001837210.1| -1 44 44 intron2 Ccin gi|169861151|ref|XP_001837210.1| -1 98 98 intron1 Lbic gnl|Lacbi1|182940 -1 30 30 intron1 Lbic gnl|Lacbi1|182940 -1 44 44 intron2 Lbic gnl|Lacbi1|182940 -1 98 98 intron1 Lbic gnl|Lacbi1|182940 -1 220 220 intron2 Abis gnl|Agabi_varbisH97_2|142569 -1 30 30 intron1 Abis gnl|Agabi_varbisH97_2|142569 -1 47 47 intron2 Abis gnl|Agabi_varbisH97_2|142569 -1 101 101 intron1 Abis gnl|Agabi_varbisH97_2|142569 -1 223 223 intron2 Fchr gnl|Phchr1|131528 -1 1 1 intron3 Fchr gnl|Phchr1|131528 -1 30 30 intron1 Fchr gnl|Phchr1|131528 -1 44 44 intron2 Fchr gnl|Phchr1|131528 -1 98 98 intron1 Fchr gnl|Phchr1|131528 -1 220 220 intron2 Fchr gnl|Phchr1|131528 -1 294 294 intron3 Amac gnl|Amac3|AMAG_03634T0 -1 1 1 intron3 Amac gnl|Amac3|AMAG_03634T0 -1 25 25 intron1 Spun gnl|Spun1|SPPG_07636T0 -1 1 1 intron3 Spun gnl|Spun1|SPPG_07636T0 -1 25 25 intron1 Spun gnl|Spun1|SPPG_07636T0 -1 98 98 intron1 Bden lcl|BDEG_01518 -1 1 1 intron3 Bden lcl|BDEG_01518 -1 25 25 intron1 Prsp gnl|Prsp1|PTSG_07253T0 -1 26 26 intron1 Prsp gnl|Prsp1|PTSG_07253T0 -1 136 136 intron3 Prsp gnl|Prsp1|PTSG_07253T0 -1 194 194 intron3 Bmal gi|170586178|ref|XP_001897856.1| -1 63 63 intron3 Bmal gi|170586178|ref|XP_001897856.1| -1 89 89 intron3 Bmal gi|170586178|ref|XP_001897856.1| -1 175 175 intron2 Bmal gi|170586178|ref|XP_001897856.1| -1 233 233 intron3 Bmal gi|170586178|ref|XP_001897856.1| -1 258 258 intron3 Cbri gi|268530064|ref|XP_002630158.1| -1 1 1 intron3 Cbri gi|268530064|ref|XP_002630158.1| -1 127 127 intron3 Cbri gi|268530064|ref|XP_002630158.1| -1 240 240 intron3 Cele gi|17534333|ref|NP_495811.1| -1 63 63 intron3 Cele gi|17534333|ref|NP_495811.1| -1 124 124 intron3 Cele gi|17534333|ref|NP_495811.1| -1 237 237 intron3 Cowc gnl|Cowc1|CAOG_02488T0 -1 1 1 intron3 Cowc gnl|Cowc1|CAOG_02488T0 -1 25 25 intron1 Tadh gi|195999960|ref|XP_002109848.1| -1 1 1 intron3 Tadh gi|195999960|ref|XP_002109848.1| -1 25 25 intron1 Tadh gi|195999960|ref|XP_002109848.1| -1 63 63 intron3 Tadh gi|195999960|ref|XP_002109848.1| -1 108 108 intron3 Tadh gi|195999960|ref|XP_002109848.1| -1 176 176 intron2 Tadh gi|195999960|ref|XP_002109848.1| -1 235 235 intron3 Tadh gi|195999960|ref|XP_002109848.1| -1 265 265 intron2 Sman gi|256053029|ref|XP_002570014.1| -1 44 44 intron3 Sman gi|256053029|ref|XP_002570014.1| -1 95 95 intron2 Sman gi|256053029|ref|XP_002570014.1| -1 152 152 intron3 Sman gi|256053029|ref|XP_002570014.1| -1 235 235 intron1 Sman gi|256053029|ref|XP_002570014.1| -1 302 302 intron3 Sman gi|256053029|ref|XP_002570014.1| -1 358 358 intron1 Sman gi|256053029|ref|XP_002570014.1| -1 431 431 intron1 Sman gi|256053029|ref|XP_002570014.1| -1 503 503 intron3 Sman gi|256053029|ref|XP_002570014.1| -1 527 527 intron1 Sman gi|256053029|ref|XP_002570014.1| -1 565 565 intron3 Lgig gnl|Lotgi1|224562 -1 1 1 intron3 Lgig gnl|Lotgi1|224562 -1 25 25 intron1 Lgig gnl|Lotgi1|224562 -1 63 63 intron3 Lgig gnl|Lotgi1|224562 -1 108 108 intron3 Lgig gnl|Lotgi1|224562 -1 176 176 intron2 Lgig gnl|Lotgi1|224562 -1 235 235 intron3 Lgig gnl|Lotgi1|224562 -1 266 266 intron2 Nvec gi|156401420|ref|XP_001639289.1| -1 1 1 intron3 Nvec gi|156401420|ref|XP_001639289.1| -1 25 25 intron1 Nvec gi|156401420|ref|XP_001639289.1| -1 63 63 intron3 Nvec gi|156401420|ref|XP_001639289.1| -1 108 108 intron3 Nvec gi|156401420|ref|XP_001639289.1| -1 176 176 intron2 Nvec gi|156401420|ref|XP_001639289.1| -1 235 235 intron3 Nvec gi|156401420|ref|XP_001639289.1| -1 265 265 intron2 Spur gi|115723047|ref|XP_001177830.1| -1 2 2 intron3 Spur gi|115723047|ref|XP_001177830.1| -1 64 64 intron3 Spur gi|115723047|ref|XP_001177830.1| -1 109 109 intron3 Spur gi|115723047|ref|XP_001177830.1| -1 177 177 intron2 Spur gi|115723047|ref|XP_001177830.1| -1 236 236 intron3 Spur gi|115723047|ref|XP_001177830.1| -1 266 266 intron2 Hmag gi|221090919|ref|XP_002156632.1| -1 1 1 intron3 Hmag gi|221090919|ref|XP_002156632.1| -1 176 176 intron2 Hmag gi|221090919|ref|XP_002156632.1| -1 235 235 intron3 Hmag gi|221090919|ref|XP_002156632.1| -1 265 265 intron2 Hrob gnl|Helro1|185715 -1 1 1 intron3 Hrob gnl|Helro1|185715 -1 25 25 intron1 Hrob gnl|Helro1|185715 -1 63 63 intron3 Hrob gnl|Helro1|185715 -1 108 108 intron3 Hrob gnl|Helro1|185715 -1 131 131 intron3 Hrob gnl|Helro1|185715 -1 176 176 intron2 Hrob gnl|Helro1|185715 -1 235 235 intron3 Hrob gnl|Helro1|185715 -1 267 267 intron2 CspI gnl|Capca1|164118 -1 1 1 intron3 CspI gnl|Capca1|164118 -1 25 25 intron1 CspI gnl|Capca1|164118 -1 63 63 intron3 CspI gnl|Capca1|164118 -1 176 176 intron2 Dpul gnl|Dappu1|299917 -1 1 1 intron3 Dpul gnl|Dappu1|299917 -1 63 63 intron3 Dpul gnl|Dappu1|299917 -1 108 108 intron3 Dpul gnl|Dappu1|299917 -1 235 235 intron3 Cint gi|198420685|ref|XP_002130156.1| -1 1 1 intron3 Cint gi|198420685|ref|XP_002130156.1| -1 63 63 intron3 Cint gi|198420685|ref|XP_002130156.1| -1 108 108 intron3 Cint gi|198420685|ref|XP_002130156.1| -1 143 143 intron2 Cint gi|198420685|ref|XP_002130156.1| -1 222 222 intron3 Cint gi|198420685|ref|XP_002130156.1| -1 265 265 intron2 Drer gi|41054305|ref|NP_956050.1| -1 1 1 intron3 Drer gi|41054305|ref|NP_956050.1| -1 25 25 intron1 Drer gi|41054305|ref|NP_956050.1| -1 63 63 intron3 Drer gi|41054305|ref|NP_956050.1| -1 108 108 intron3 Drer gi|41054305|ref|NP_956050.1| -1 176 176 intron2 Drer gi|41054305|ref|NP_956050.1| -1 235 235 intron3 Drer gi|41054305|ref|NP_956050.1| -1 265 265 intron2 Hsap gi|14591909|ref|NP_000960.2| -1 1 1 intron3 Hsap gi|14591909|ref|NP_000960.2| -1 25 25 intron1 Hsap gi|14591909|ref|NP_000960.2| -1 63 63 intron3 Hsap gi|14591909|ref|NP_000960.2| -1 108 108 intron3 Hsap gi|14591909|ref|NP_000960.2| -1 176 176 intron2 Hsap gi|14591909|ref|NP_000960.2| -1 235 235 intron3 Hsap gi|14591909|ref|NP_000960.2| -1 265 265 intron2 Ggal gi|45383023|ref|NP_989912.1| -1 24 24 intron1 Ggal gi|45383023|ref|NP_989912.1| -1 62 62 intron3 Ggal gi|45383023|ref|NP_989912.1| -1 107 107 intron3 Ggal gi|45383023|ref|NP_989912.1| -1 175 175 intron2 Ggal gi|45383023|ref|NP_989912.1| -1 234 234 intron3 Ggal gi|45383023|ref|NP_989912.1| -1 264 264 intron2 Tgut gi|224057427|ref|XP_002193304.1| -1 1 1 intron3 Tgut gi|224057427|ref|XP_002193304.1| -1 25 25 intron1 Tgut gi|224057427|ref|XP_002193304.1| -1 63 63 intron3 Tgut gi|224057427|ref|XP_002193304.1| -1 108 108 intron3 Tgut gi|224057427|ref|XP_002193304.1| -1 176 176 intron2 Tgut gi|224057427|ref|XP_002193304.1| -1 235 235 intron3 Tgut gi|224057427|ref|XP_002193304.1| -1 265 265 intron2 Apis gi|193627230|ref|XP_001951987.1| -1 1 1 intron3 Apis gi|193627230|ref|XP_001951987.1| -1 63 63 intron3 Apis gi|193627230|ref|XP_001951987.1| -1 108 108 intron3 Apis gi|193627230|ref|XP_001951987.1| -1 176 176 intron2 Apis gi|193627230|ref|XP_001951987.1| -1 235 235 intron3 Bflo gi|260786282|ref|XP_002588187.1| -1 1 1 intron3 Bflo gi|260786282|ref|XP_002588187.1| -1 25 25 intron1 Bflo gi|260786282|ref|XP_002588187.1| -1 63 63 intron3 Bflo gi|260786282|ref|XP_002588187.1| -1 108 108 intron3 Bflo gi|260786282|ref|XP_002588187.1| -1 176 176 intron2 Bflo gi|260786282|ref|XP_002588187.1| -1 263 263 intron3 Bflo gi|260786282|ref|XP_002588187.1| -1 293 293 intron2 Agam gi|118791496|ref|XP_319782.3| -1 234 234 intron3 Agam gi|118791496|ref|XP_319782.3| -1 246 246 intron3 Agam gi|118791496|ref|XP_319782.3| -1 297 297 intron3 Phum gi|242009629|ref|XP_002425585.1| -1 8 8 intron3 Phum gi|242009629|ref|XP_002425585.1| -1 70 70 intron3 Aaeg gi|157105498|ref|XP_001648896.1| -1 1 1 intron3 Aaeg gi|157105498|ref|XP_001648896.1| -1 89 89 intron3 Aaeg gi|157105498|ref|XP_001648896.1| -1 235 235 intron3 Bmor gnl|Bmor|BGIBMGA007879-PA -1 1 1 intron3 Bmor gnl|Bmor|BGIBMGA007879-PA -1 39 39 intron3 Bmor gnl|Bmor|BGIBMGA007879-PA -1 87 87 intron3 Bmor gnl|Bmor|BGIBMGA007879-PA -1 141 141 intron2 Bmor gnl|Bmor|BGIBMGA007879-PA -1 194 194 intron2 Bmor gnl|Bmor|BGIBMGA007879-PA -1 233 233 intron3 Amel gi|66537377|ref|XP_624620.1| -1 1 1 intron3 Amel gi|66537377|ref|XP_624620.1| -1 63 63 intron3 Amel gi|66537377|ref|XP_624620.1| -1 108 108 intron3 Amel gi|66537377|ref|XP_624620.1| -1 177 177 intron2 Dmel gi|116007382|ref|NP_001036387.1| -1 1 1 intron3 Dmel gi|116007382|ref|NP_001036387.1| -1 89 89 intron3 Dmel gi|116007382|ref|NP_001036387.1| -1 235 235 intron3 Dmoj gi|195116155|ref|XP_002002621.1| -1 459 459 intron3 Dmoj gi|195116155|ref|XP_002002621.1| -1 547 547 intron3 Dmoj gi|195116155|ref|XP_002002621.1| -1 693 693 intron3