#| ca.umontreal.iro.evolution.introns.WriteIntronTable Tue Apr 12 01:40:58 EDT 2011 #| System: Mac OS X 10.6.7 x86_64 #| Java: Java HotSpot(TM) 64-Bit Server VM 19.1-b02-334 (1.6.0_24-b07-334-10M3326) mixed mode, Apple Inc. #| Current directory: /Users/csuros/Work/introns/larger-data/denovo/census2010/pipeline/3MCMC/HTML #| Arguments: #| Input alignment: alignments/KOG0878.faa #| Intron position list parenthesis: {i .. i} #| Intron positions are relative to: sequence intron1 0,100,200 intron2 0,80,160 intron3 0,50,100 Ptet gi|145527454|ref|XP_001449527.1| -1 67 67 intron2 Pviv gi|156097090|ref|XP_001614578.1| -1 29 29 intron3 Pyoe gi|82914861|ref|XP_728876.1| -1 29 29 intron3 Pfal gi|124506631|ref|XP_001351913.1| -1 29 29 intron3 Sman gi|256077559|ref|XP_002575070.1| -1 1 1 intron3 Sman gi|256077559|ref|XP_002575070.1| -1 29 29 intron3 Sman gi|256077559|ref|XP_002575070.1| -1 68 68 intron3 Sman gi|256077559|ref|XP_002575070.1| -1 96 96 intron3 Sman gi|256077559|ref|XP_002575070.1| -1 153 153 intron3 Sman gi|256077559|ref|XP_002575070.1| -1 221 221 intron2 Sman gi|256077559|ref|XP_002575070.1| -1 292 292 intron3 Sman gi|256077559|ref|XP_002575070.1| -1 371 371 intron2 Sman gi|256077559|ref|XP_002575070.1| -1 407 407 intron3 Sman gi|256077559|ref|XP_002575070.1| -1 444 444 intron1 Sman gi|256077559|ref|XP_002575070.1| -1 487 487 intron1 Sman gi|256077559|ref|XP_002575070.1| -1 516 516 intron2 Sman gi|256077559|ref|XP_002575070.1| -1 629 629 intron3 Bbov gi|156088017|ref|XP_001611415.1| -1 29 29 intron3 Tann gi|84996123|ref|XP_952783.1| -1 29 29 intron3 Tpar gi|71028172|ref|XP_763729.1| -1 29 29 intron3 Prsp lcl|PTSG_01989T0 -1 30 30 intron3 Prsp lcl|PTSG_01989T0 -1 63 63 intron3 Prsp lcl|PTSG_01989T0 -1 81 81 intron3 Mbre gi|167534746|ref|XP_001749048.1| -1 30 30 intron3 Mbre gi|167534746|ref|XP_001749048.1| -1 63 63 intron3 Cbri gi|268532552|ref|XP_002631404.1| -1 26 26 intron2 Cbri gi|268532552|ref|XP_002631404.1| -1 82 82 intron3 Cele gi|17536431|ref|NP_495934.1| -1 26 26 intron2 Cele gi|17536431|ref|NP_495934.1| -1 82 82 intron3 Dpur gnl|Dicpu1|48405 -1 12 12 intron3 Dpur gnl|Dicpu1|48405 -1 32 32 intron2 Dpur gnl|Dicpu1|48405 -1 59 59 intron2 Dpur gnl|Dicpu1|48405 -1 69 69 intron3 Dpur gnl|Dicpu1|48405 -1 107 107 intron3 Ehux gnl|Emihu1|351999 -1 47 47 intron2 Ehux gnl|Emihu1|351999 -1 93 93 intron2 Tgon gi|237839021|ref|XP_002368808.1| -1 31 31 intron3 Bmal gi|170584730|ref|XP_001897147.1| -1 40 40 intron3 Bmal gi|170584730|ref|XP_001897147.1| -1 84 84 intron3 Bmal gi|170584730|ref|XP_001897147.1| -1 128 128 intron3 Bfuc gi|154303108|ref|XP_001551962.1| -1 14 14 intron1 Bfuc gi|154303108|ref|XP_001551962.1| -1 55 55 intron3 Bfuc gi|154303108|ref|XP_001551962.1| -1 96 96 intron2 Sscl gi|156058678|ref|XP_001595262.1| -1 14 14 intron1 Sscl gi|156058678|ref|XP_001595262.1| -1 55 55 intron3 Sscl gi|156058678|ref|XP_001595262.1| -1 96 96 intron2 Mfij gnl|Mycfi1|52944 -1 55 55 intron3 Mfij gnl|Mycfi1|52944 -1 96 96 intron2 Mgra gnl|Mycgr3|103191 -1 55 55 intron3 Mgra gnl|Mycgr3|103191 -1 96 96 intron2 Pnod gi|169625599|ref|XP_001806203.1| -1 14 14 intron1 Pnod gi|169625599|ref|XP_001806203.1| -1 28 28 intron1 Pnod gi|169625599|ref|XP_001806203.1| -1 55 55 intron3 Pnod gi|169625599|ref|XP_001806203.1| -1 80 80 intron1 Pnod gi|169625599|ref|XP_001806203.1| -1 96 96 intron2 Chet gnl|CocheC5_1|73164 -1 14 14 intron1 Chet gnl|CocheC5_1|73164 -1 28 28 intron1 Chet gnl|CocheC5_1|73164 -1 55 55 intron3 Chet gnl|CocheC5_1|73164 -1 75 75 intron3 Chet gnl|CocheC5_1|73164 -1 96 96 intron2 Prep gi|189200146|ref|XP_001936410.1| -1 14 14 intron1 Prep gi|189200146|ref|XP_001936410.1| -1 28 28 intron1 Prep gi|189200146|ref|XP_001936410.1| -1 55 55 intron3 Prep gi|189200146|ref|XP_001936410.1| -1 96 96 intron2 Anid gi|67900734|ref|XP_680623.1| -1 14 14 intron1 Anid gi|67900734|ref|XP_680623.1| -1 55 55 intron3 Anid gi|67900734|ref|XP_680623.1| -1 96 96 intron2 Cimm gi|119175239|ref|XP_001239885.1| -1 14 14 intron1 Cimm gi|119175239|ref|XP_001239885.1| -1 55 55 intron3 Cimm gi|119175239|ref|XP_001239885.1| -1 96 96 intron2 Gzea gi|46116590|ref|XP_384313.1| -1 10 10 intron3 Gzea gi|46116590|ref|XP_384313.1| -1 49 49 intron3 Gzea gi|46116590|ref|XP_384313.1| -1 90 90 intron2 Mgri gi|145602017|ref|XP_359529.2| -1 14 14 intron1 Mgri gi|145602017|ref|XP_359529.2| -1 55 55 intron3 Mgri gi|145602017|ref|XP_359529.2| -1 96 96 intron2 C169 gnl|Coc_C169_1|45801 -1 31 31 intron3 C169 gnl|Coc_C169_1|45801 -1 73 73 intron1 C169 gnl|Coc_C169_1|45801 -1 117 117 intron3 M299 gi|255081965|ref|XP_002508201.1| -1 1 1 intron3 M299 gi|255081965|ref|XP_002508201.1| -1 30 30 intron3 Otau gnl|Ostta4|23350 -1 31 31 intron3 Atha gi|15237436|ref|NP_199455.1| -1 30 30 intron3 Atha gi|15237436|ref|NP_199455.1| -1 91 91 intron2 Vvin gi|225467959|ref|XP_002268019.1| -1 30 30 intron3 Vvin gi|225467959|ref|XP_002268019.1| -1 91 91 intron2 Sbic gi|242082135|ref|XP_002445836.1| -1 30 30 intron3 Sbic gi|242082135|ref|XP_002445836.1| -1 91 91 intron2 Osat gi|115477385|ref|NP_001062288.1| -1 30 30 intron3 Osat gi|115477385|ref|NP_001062288.1| -1 91 91 intron2 Ppat gi|168037970|ref|XP_001771475.1| -1 30 30 intron3 Ppat gi|168037970|ref|XP_001771475.1| -1 91 91 intron2 Smoe gnl|Selmo1|146656 -1 30 30 intron3 Smoe gnl|Selmo1|146656 -1 91 91 intron2 C64A gnl|ChlNC64A_1|35552 -1 30 30 intron3 C64A gnl|ChlNC64A_1|35552 -1 72 72 intron1 C64A gnl|ChlNC64A_1|35552 -1 116 116 intron3 Crei gi|159474808|ref|XP_001695517.1| -1 46 46 intron2 Crei gi|159474808|ref|XP_001695517.1| -1 91 91 intron2 Vcar gnl|Volca1|72833 -1 46 46 intron2 Vcar gnl|Volca1|72833 -1 91 91 intron2 Cneo gi|134118555|ref|XP_772051.1| -1 39 39 intron3 Cneo gi|134118555|ref|XP_772051.1| -1 116 116 intron2 Sros gnl|Sporo1|21046 -1 16 16 intron3 Sros gnl|Sporo1|21046 -1 55 55 intron1 Sros gnl|Sporo1|21046 -1 113 113 intron3 Mlar gnl|Mellp1|50500 -1 16 16 intron2 Pgra lcl|PGTG_11217 -1 16 16 intron2 Abis gnl|Agabi_varbisH97_2|62786 -1 16 16 intron2 Abis gnl|Agabi_varbisH97_2|62786 -1 57 57 intron2 Abis gnl|Agabi_varbisH97_2|62786 -1 60 60 intron3 Abis gnl|Agabi_varbisH97_2|62786 -1 109 109 intron2 Abis gnl|Agabi_varbisH97_2|62786 -1 128 128 intron2 Abis gnl|Agabi_varbisH97_2|62786 -1 141 141 intron1 Abis gnl|Agabi_varbisH97_2|62786 -1 175 175 intron2 Abis gnl|Agabi_varbisH97_2|62786 -1 198 198 intron2 Abis gnl|Agabi_varbisH97_2|62786 -1 236 236 intron1 Abis gnl|Agabi_varbisH97_2|62786 -1 273 273 intron2 Fchr gnl|Phchr1|134768 -1 3 3 intron3 Fchr gnl|Phchr1|134768 -1 15 15 intron2 Fchr gnl|Phchr1|134768 -1 51 51 intron3 Fchr gnl|Phchr1|134768 -1 59 59 intron3 Fchr gnl|Phchr1|134768 -1 108 108 intron2 Fchr gnl|Phchr1|134768 -1 127 127 intron3 Lbic gnl|Lacbi1|192399 -1 14 14 intron2 Lbic gnl|Lacbi1|192399 -1 50 50 intron3 Lbic gnl|Lacbi1|192399 -1 58 58 intron3 Lbic gnl|Lacbi1|192399 -1 107 107 intron2 Pbla gnl|Phybl1|74712 -1 30 30 intron3 Bden lcl|BDEG_08152 -1 30 30 intron3 Bden lcl|BDEG_08152 -1 130 130 intron3 Spun lcl|SPPG_05556T0 -1 30 30 intron3 Amac lcl|AMAG_14957T0 -1 30 30 intron3 Hmag gi|221125281|ref|XP_002166888.1| -1 81 81 intron3 CspI gnl|Capca1|154331 -1 31 31 intron3 CspI gnl|Capca1|154331 -1 82 82 intron3 Cint gi|74096045|ref|NP_001027680.1| -1 31 31 intron3 Cint gi|74096045|ref|NP_001027680.1| -1 87 87 intron3 Tadh gi|195995893|ref|XP_002107815.1| -1 30 30 intron3 Tadh gi|195995893|ref|XP_002107815.1| -1 81 81 intron3 Nvec gi|156395278|ref|XP_001637038.1| -1 30 30 intron3 Nvec gi|156395278|ref|XP_001637038.1| -1 81 81 intron3 Spur gi|72084318|ref|XP_782126.1| -1 33 33 intron3 Spur gi|72084318|ref|XP_782126.1| -1 84 84 intron3 Hrob gnl|Helro1|115955 -1 32 32 intron3 Hrob gnl|Helro1|115955 -1 83 83 intron3 Isca gi|242046484|ref|XP_002399507.1| -1 58 58 intron3 Hsap gi|113417744|ref|XP_934157.2| -1 2 2 intron2 Drer gi|91176292|ref|NP_001035132.1| -1 32 32 intron3 Drer gi|91176292|ref|NP_001035132.1| -1 93 93 intron2 Tgut gi|224066697|ref|XP_002189082.1| -1 32 32 intron3 Tgut gi|224066697|ref|XP_002189082.1| -1 93 93 intron2 Apis gi|187115162|ref|NP_001119682.1| -1 31 31 intron3 Apis gi|187115162|ref|NP_001119682.1| -1 82 82 intron3 Dpul gnl|Dappu1|230219 -1 31 31 intron3 Dpul gnl|Dappu1|230219 -1 82 82 intron3 Bflo gi|260794300|ref|XP_002592147.1| -1 31 31 intron3 Bflo gi|260794300|ref|XP_002592147.1| -1 82 82 intron3 Phum gi|242020708|ref|XP_002430794.1| -1 82 82 intron3 Tcas gi|91087871|ref|XP_969564.1| -1 31 31 intron3 Tcas gi|91087871|ref|XP_969564.1| -1 82 82 intron3 Bmor gnl|Bmor|BGIBMGA000066-PA -1 39 39 intron1 Bmor gnl|Bmor|BGIBMGA000066-PA -1 75 75 intron3 Nvit gi|156551531|ref|XP_001601579.1| -1 31 31 intron3 Nvit gi|156551531|ref|XP_001601579.1| -1 82 82 intron3 Amel gi|58585114|ref|NP_001011587.1| -1 31 31 intron3 Amel gi|58585114|ref|NP_001011587.1| -1 82 82 intron3 Dmel gi|24651273|ref|NP_733339.1| -1 11 11 intron2 Dmel gi|24651273|ref|NP_733339.1| -1 44 44 intron3 Dmoj gi|195108589|ref|XP_001998875.1| -1 31 31 intron3 Aaeg gi|157136027|ref|XP_001656734.1| -1 31 31 intron3 Agam gi|118793541|ref|XP_320915.2| -1 31 31 intron3