#| ca.umontreal.iro.evolution.introns.WriteIntronTable Tue Apr 12 01:40:59 EDT 2011 #| System: Mac OS X 10.6.7 x86_64 #| Java: Java HotSpot(TM) 64-Bit Server VM 19.1-b02-334 (1.6.0_24-b07-334-10M3326) mixed mode, Apple Inc. #| Current directory: /Users/csuros/Work/introns/larger-data/denovo/census2010/pipeline/3MCMC/HTML #| Arguments: #| Input alignment: alignments/KOG0884.faa #| Intron position list parenthesis: {i .. i} #| Intron positions are relative to: sequence intron1 0,100,200 intron2 0,80,160 intron3 0,50,100 Pnod gi|169608189|ref|XP_001797514.1| -1 4 4 intron3 Chet gnl|CocheC5_1|116976 -1 4 4 intron3 Prep gi|189189580|ref|XP_001931129.1| -1 4 4 intron3 Mgri gi|39942318|ref|XP_360696.1| -1 26 26 intron3 Ncra gi|164423469|ref|XP_001728061.1| -1 26 26 intron3 Gzea gi|46108116|ref|XP_381116.1| -1 16 16 intron1 Gzea gi|46108116|ref|XP_381116.1| -1 22 22 intron2 Gzea gi|46108116|ref|XP_381116.1| -1 36 36 intron1 Gzea gi|46108116|ref|XP_381116.1| -1 37 37 intron3 Sscl gi|156060085|ref|XP_001595965.1| -1 111 111 intron3 Sscl gi|156060085|ref|XP_001595965.1| -1 129 129 intron2 Anid gi|67523995|ref|XP_660057.1| -1 27 27 intron3 Anid gi|67523995|ref|XP_660057.1| -1 49 49 intron3 Cimm gi|119175879|ref|XP_001240091.1| -1 4 4 intron3 Cimm gi|119175879|ref|XP_001240091.1| -1 26 26 intron3 Uree gi|258572732|ref|XP_002545128.1| -1 4 4 intron3 Uree gi|258572732|ref|XP_002545128.1| -1 26 26 intron3 Hmag gi|221119695|ref|XP_002156230.1| -1 130 130 intron3 Hmag gi|221119695|ref|XP_002156230.1| -1 168 168 intron2 Hmag gi|221119695|ref|XP_002156230.1| -1 251 251 intron3 Hmag gi|221119695|ref|XP_002156230.1| -1 277 277 intron1 Hmag gi|221119695|ref|XP_002156230.1| -1 302 302 intron1 Hmag gi|221119695|ref|XP_002156230.1| -1 319 319 intron3 Hmag gi|221119695|ref|XP_002156230.1| -1 333 333 intron2 Hmag gi|221119695|ref|XP_002156230.1| -1 356 356 intron1 Hmag gi|221119695|ref|XP_002156230.1| -1 420 420 intron2 Hmag gi|221119695|ref|XP_002156230.1| -1 459 459 intron2 Hmag gi|221119695|ref|XP_002156230.1| -1 555 555 intron2 Hmag gi|221119695|ref|XP_002156230.1| -1 644 644 intron1 Hmag gi|221119695|ref|XP_002156230.1| -1 711 711 intron3 Hmag gi|221119695|ref|XP_002156230.1| -1 771 771 intron2 Hmag gi|221119695|ref|XP_002156230.1| -1 810 810 intron2 Hmag gi|221119695|ref|XP_002156230.1| -1 929 929 intron1 Hmag gi|221119695|ref|XP_002156230.1| -1 943 943 intron1 Hmag gi|221119695|ref|XP_002156230.1| -1 969 969 intron3 Aano gnl|Auran1|59560 -1 8 8 intron3 Aano gnl|Auran1|59560 -1 24 24 intron2 Tann gi|85000639|ref|XP_955038.1| -1 26 26 intron3 Tann gi|85000639|ref|XP_955038.1| -1 91 91 intron3 Tann gi|85000639|ref|XP_955038.1| -1 132 132 intron2 Tpar gi|71027453|ref|XP_763370.1| -1 26 26 intron3 Tpar gi|71027453|ref|XP_763370.1| -1 44 44 intron2 Tpar gi|71027453|ref|XP_763370.1| -1 80 80 intron3 Tpar gi|71027453|ref|XP_763370.1| -1 121 121 intron2 Bbov gi|156084132|ref|XP_001609549.1| -1 26 26 intron3 Bbov gi|156084132|ref|XP_001609549.1| -1 44 44 intron2 Bbov gi|156084132|ref|XP_001609549.1| -1 80 80 intron3 Bbov gi|156084132|ref|XP_001609549.1| -1 121 121 intron2 Bbov gi|156084132|ref|XP_001609549.1| -1 135 135 intron1 Tgon gi|237838125|ref|XP_002368360.1| -1 26 26 intron3 Tgon gi|237838125|ref|XP_002368360.1| -1 44 44 intron2 Tgon gi|237838125|ref|XP_002368360.1| -1 112 112 intron3 Pyoe gi|83286112|ref|XP_730019.1| -1 26 26 intron3 Pyoe gi|83286112|ref|XP_730019.1| -1 44 44 intron2 Pfal gi|124803884|ref|XP_001347841.1| -1 26 26 intron3 Pfal gi|124803884|ref|XP_001347841.1| -1 44 44 intron2 Pfal gi|124803884|ref|XP_001347841.1| -1 80 80 intron3 Pfal gi|124803884|ref|XP_001347841.1| -1 121 121 intron2 Pfal gi|124803884|ref|XP_001347841.1| -1 135 135 intron1 Pviv gi|156098496|ref|XP_001615280.1| -1 26 26 intron3 Pviv gi|156098496|ref|XP_001615280.1| -1 44 44 intron2 Pviv gi|156098496|ref|XP_001615280.1| -1 80 80 intron3 Pviv gi|156098496|ref|XP_001615280.1| -1 121 121 intron2 Pviv gi|156098496|ref|XP_001615280.1| -1 135 135 intron1 Ptet gi|145511752|ref|XP_001441798.1| -1 58 58 intron1 Fcyl gnl|Fracy1|179779 -1 100 100 intron3 Ftri gi|219127710|ref|XP_002184073.1| -1 53 53 intron1 Ftri gi|219127710|ref|XP_002184073.1| -1 101 101 intron1 Cowc gnl|Cowc1|CAOG_02076T0 -1 8 8 intron3 Cowc gnl|Cowc1|CAOG_02076T0 -1 33 33 intron3 Cowc gnl|Cowc1|CAOG_02076T0 -1 51 51 intron2 Cowc gnl|Cowc1|CAOG_02076T0 -1 87 87 intron3 Cowc gnl|Cowc1|CAOG_02076T0 -1 127 127 intron2 Sman gi|256085850|ref|XP_002579124.1| -1 40 40 intron1 Sman gi|256085850|ref|XP_002579124.1| -1 62 62 intron3 Sman gi|256085850|ref|XP_002579124.1| -1 102 102 intron2 Bmal gi|170585638|ref|XP_001897589.1| -1 26 26 intron3 Bmal gi|170585638|ref|XP_001897589.1| -1 80 80 intron3 Bmal gi|170585638|ref|XP_001897589.1| -1 120 120 intron2 Cbri gi|268530650|ref|XP_002630451.1| -1 26 26 intron3 Cbri gi|268530650|ref|XP_002630451.1| -1 80 80 intron3 Cbri gi|268530650|ref|XP_002630451.1| -1 120 120 intron2 Cele gi|71980594|ref|NP_001021890.1| -1 26 26 intron3 Cele gi|71980594|ref|NP_001021890.1| -1 80 80 intron3 Cele gi|71980594|ref|NP_001021890.1| -1 120 120 intron2 Cele gi|71980594|ref|NP_001021890.1| -1 147 147 intron2 Isca gi|242003096|ref|XP_002436128.1| -1 44 44 intron3 Isca gi|242003096|ref|XP_002436128.1| -1 76 76 intron1 Isca gi|242003096|ref|XP_002436128.1| -1 98 98 intron3 Lgig gnl|Lotgi1|185007 -1 1 1 intron3 Lgig gnl|Lotgi1|185007 -1 26 26 intron3 Lgig gnl|Lotgi1|185007 -1 58 58 intron1 Lgig gnl|Lotgi1|185007 -1 80 80 intron3 Lgig gnl|Lotgi1|185007 -1 120 120 intron2 Tadh gi|195999966|ref|XP_002109851.1| -1 26 26 intron3 Tadh gi|195999966|ref|XP_002109851.1| -1 44 44 intron2 Tadh gi|195999966|ref|XP_002109851.1| -1 58 58 intron1 Tadh gi|195999966|ref|XP_002109851.1| -1 80 80 intron3 Tadh gi|195999966|ref|XP_002109851.1| -1 120 120 intron2 Hrob gnl|Helro1|180721 -1 1 1 intron3 Hrob gnl|Helro1|180721 -1 26 26 intron3 Hrob gnl|Helro1|180721 -1 58 58 intron1 Hrob gnl|Helro1|180721 -1 80 80 intron3 Hrob gnl|Helro1|180721 -1 120 120 intron2 CspI gnl|Capca1|140600 -1 26 26 intron3 CspI gnl|Capca1|140600 -1 58 58 intron1 CspI gnl|Capca1|140600 -1 80 80 intron3 CspI gnl|Capca1|140600 -1 120 120 intron2 Spur gi|72105672|ref|XP_796922.1| -1 2 2 intron3 Spur gi|72105672|ref|XP_796922.1| -1 45 45 intron2 Spur gi|72105672|ref|XP_796922.1| -1 81 81 intron3 Spur gi|72105672|ref|XP_796922.1| -1 121 121 intron2 Nvec gi|156378077|ref|XP_001630971.1| -1 1 1 intron3 Nvec gi|156378077|ref|XP_001630971.1| -1 26 26 intron3 Nvec gi|156378077|ref|XP_001630971.1| -1 44 44 intron2 Nvec gi|156378077|ref|XP_001630971.1| -1 58 58 intron1 Nvec gi|156378077|ref|XP_001630971.1| -1 80 80 intron3 Nvec gi|156378077|ref|XP_001630971.1| -1 120 120 intron2 Bflo gi|260811015|ref|XP_002600218.1| -1 1 1 intron3 Bflo gi|260811015|ref|XP_002600218.1| -1 26 26 intron3 Bflo gi|260811015|ref|XP_002600218.1| -1 44 44 intron2 Bflo gi|260811015|ref|XP_002600218.1| -1 80 80 intron3 Bflo gi|260811015|ref|XP_002600218.1| -1 120 120 intron2 Drer gi|50344948|ref|NP_001002146.1| -1 1 1 intron3 Drer gi|50344948|ref|NP_001002146.1| -1 26 26 intron3 Drer gi|50344948|ref|NP_001002146.1| -1 58 58 intron1 Drer gi|50344948|ref|NP_001002146.1| -1 80 80 intron3 Drer gi|50344948|ref|NP_001002146.1| -1 120 120 intron2 Hsap gi|14277126|ref|NP_115861.1| -1 1 1 intron3 Hsap gi|14277126|ref|NP_115861.1| -1 26 26 intron3 Hsap gi|14277126|ref|NP_115861.1| -1 62 62 intron1 Hsap gi|14277126|ref|NP_115861.1| -1 84 84 intron3 Hsap gi|14277126|ref|NP_115861.1| -1 124 124 intron2 Ggal gi|56605962|ref|NP_001008475.1| -1 1 1 intron3 Ggal gi|56605962|ref|NP_001008475.1| -1 26 26 intron3 Ggal gi|56605962|ref|NP_001008475.1| -1 58 58 intron1 Ggal gi|56605962|ref|NP_001008475.1| -1 80 80 intron3 Ggal gi|56605962|ref|NP_001008475.1| -1 120 120 intron2 Tgut gi|224055447|ref|XP_002190699.1| -1 9 9 intron1 Tgut gi|224055447|ref|XP_002190699.1| -1 31 31 intron3 Tgut gi|224055447|ref|XP_002190699.1| -1 71 71 intron2 Dpul gnl|Dappu1|299909 -1 1 1 intron3 Dpul gnl|Dappu1|299909 -1 13 13 intron3 Dpul gnl|Dappu1|299909 -1 26 26 intron3 Dpul gnl|Dappu1|299909 -1 120 120 intron2 Dpul gnl|Dappu1|299909 -1 135 135 intron3 Phum gi|242009749|ref|XP_002425645.1| -1 22 22 intron3 Phum gi|242009749|ref|XP_002425645.1| -1 48 48 intron3 Phum gi|242009749|ref|XP_002425645.1| -1 73 73 intron3 Phum gi|242009749|ref|XP_002425645.1| -1 127 127 intron3 Bmor gnl|Bmor|BGIBMGA007849-PA -1 47 47 intron3 Bmor gnl|Bmor|BGIBMGA007849-PA -1 80 80 intron3 Bmor gnl|Bmor|BGIBMGA007849-PA -1 120 120 intron2 Amel gi|66534975|ref|XP_624114.1| -1 6 6 intron3 Amel gi|66534975|ref|XP_624114.1| -1 31 31 intron3 Amel gi|66534975|ref|XP_624114.1| -1 125 125 intron2 Nvit gi|156543128|ref|XP_001605618.1| -1 24 24 intron3 Nvit gi|156543128|ref|XP_001605618.1| -1 49 49 intron3 Nvit gi|156543128|ref|XP_001605618.1| -1 143 143 intron2 Tcas gi|91077922|ref|XP_974063.1| -1 11 11 intron3 Tcas gi|91077922|ref|XP_974063.1| -1 90 90 intron3 Tcas gi|91077922|ref|XP_974063.1| -1 130 130 intron2 Dmel gi|24652460|ref|NP_724939.1| -1 1 1 intron3 Dmel gi|24652460|ref|NP_724939.1| -1 80 80 intron3 Dmoj gi|195120844|ref|XP_002004931.1| -1 20 20 intron3 Dmoj gi|195120844|ref|XP_002004931.1| -1 99 99 intron3 Aaeg gi|157107329|ref|XP_001649729.1| -1 1 1 intron3 Aaeg gi|157107329|ref|XP_001649729.1| -1 120 120 intron2 Agam gi|58392151|ref|XP_319139.2| -1 120 120 intron2 C169 gnl|Coc_C169_1|31089 -1 1 1 intron3 C169 gnl|Coc_C169_1|31089 -1 58 58 intron1 C169 gnl|Coc_C169_1|31089 -1 104 104 intron2 C169 gnl|Coc_C169_1|31089 -1 118 118 intron1 C169 gnl|Coc_C169_1|31089 -1 142 142 intron1 C64A gnl|ChlNC64A_1|51644 -1 1 1 intron3 C64A gnl|ChlNC64A_1|51644 -1 52 52 intron3 C64A gnl|ChlNC64A_1|51644 -1 116 116 intron1 Vcar gnl|Volca1|101939 -1 20 20 intron3 Vcar gnl|Volca1|101939 -1 54 54 intron1 Vcar gnl|Volca1|101939 -1 102 102 intron2 Vcar gnl|Volca1|101939 -1 123 123 intron3 Vcar gnl|Volca1|101939 -1 142 142 intron3 Crei gi|159483401|ref|XP_001699749.1| -1 20 20 intron3 Crei gi|159483401|ref|XP_001699749.1| -1 54 54 intron1 Crei gi|159483401|ref|XP_001699749.1| -1 102 102 intron2 Crei gi|159483401|ref|XP_001699749.1| -1 123 123 intron3 Crei gi|159483401|ref|XP_001699749.1| -1 142 142 intron3 Ddis gi|66802370|ref|XP_629967.1| -1 80 80 intron3 Dpur gnl|Dicpu1|80624 -1 1 1 intron3 Dpur gnl|Dicpu1|80624 -1 80 80 intron3 Dpur gnl|Dicpu1|80624 -1 120 120 intron2 Pram gnl|Phyra1_1|53003 -1 26 26 intron3 Pram gnl|Phyra1_1|53003 -1 50 50 intron3 Pram gnl|Phyra1_1|53003 -1 83 83 intron3 Pram gnl|Phyra1_1|53003 -1 123 123 intron2 Psoj gnl|Physo1_1|157637 -1 1 1 intron3 Psoj gnl|Physo1_1|157637 -1 26 26 intron3 Psoj gnl|Physo1_1|157637 -1 55 55 intron3 Psoj gnl|Physo1_1|157637 -1 88 88 intron3 Psoj gnl|Physo1_1|157637 -1 128 128 intron2 Pcap gnl|PhycaF7|73956 -1 1 1 intron3 Pcap gnl|PhycaF7|73956 -1 26 26 intron3 Pcap gnl|PhycaF7|73956 -1 44 44 intron2 Pcap gnl|PhycaF7|73956 -1 80 80 intron3 Pcap gnl|PhycaF7|73956 -1 120 120 intron2 Mbre gi|167534911|ref|XP_001749130.1| -1 18 18 intron3 Mbre gi|167534911|ref|XP_001749130.1| -1 61 61 intron2 Mbre gi|167534911|ref|XP_001749130.1| -1 75 75 intron1 Mbre gi|167534911|ref|XP_001749130.1| -1 97 97 intron3 Mbre gi|167534911|ref|XP_001749130.1| -1 137 137 intron2 Prsp lcl|PTSG_03391T0 -1 1 1 intron3 Prsp lcl|PTSG_03391T0 -1 80 80 intron3 Prsp lcl|PTSG_03391T0 -1 120 120 intron2 Sbic gi|242091840|ref|XP_002436410.1| -1 1 1 intron3 Sbic gi|242091840|ref|XP_002436410.1| -1 80 80 intron3 Osat gi|115466182|ref|NP_001056690.1| -1 1 1 intron3 Ppat gi|168039876|ref|XP_001772422.1| -1 1 1 intron3 Ppat gi|168039876|ref|XP_001772422.1| -1 26 26 intron3 Ppat gi|168039876|ref|XP_001772422.1| -1 80 80 intron3 Ppat gi|168039876|ref|XP_001772422.1| -1 133 133 intron3 Smoe gnl|Selmo1|79427 -1 25 25 intron3 Smoe gnl|Selmo1|79427 -1 79 79 intron3 Smoe gnl|Selmo1|79427 -1 132 132 intron3 Atha gi|30678211|ref|NP_171696.2| -1 1 1 intron3 Atha gi|30678211|ref|NP_171696.2| -1 26 26 intron3 Atha gi|30678211|ref|NP_171696.2| -1 80 80 intron3 Atha gi|30678211|ref|NP_171696.2| -1 133 133 intron3 Vvin gi|225453768|ref|XP_002274583.1| -1 1 1 intron3 Vvin gi|225453768|ref|XP_002274583.1| -1 26 26 intron3 Vvin gi|225453768|ref|XP_002274583.1| -1 80 80 intron3 Vvin gi|225453768|ref|XP_002274583.1| -1 133 133 intron3 Bden lcl|BDEG_05126 -1 22 22 intron3 Bden lcl|BDEG_05126 -1 48 48 intron3 Bden lcl|BDEG_05126 -1 76 76 intron3 Bden lcl|BDEG_05126 -1 116 116 intron2 Cneo gi|134111617|ref|XP_775344.1| -1 1 1 intron3 Cneo gi|134111617|ref|XP_775344.1| -1 13 13 intron3 Cneo gi|134111617|ref|XP_775344.1| -1 26 26 intron3 Cneo gi|134111617|ref|XP_775344.1| -1 80 80 intron3 Cneo gi|134111617|ref|XP_775344.1| -1 100 100 intron3 Cneo gi|134111617|ref|XP_775344.1| -1 120 120 intron2 Spun lcl|SPPG_02972T0 -1 34 34 intron3 Spun lcl|SPPG_02972T0 -1 53 53 intron1 Spun lcl|SPPG_02972T0 -1 59 59 intron3 Spun lcl|SPPG_02972T0 -1 77 77 intron2 Spun lcl|SPPG_02972T0 -1 113 113 intron3 Spun lcl|SPPG_02972T0 -1 153 153 intron2 Amac lcl|AMAG_03947T0 -1 13 13 intron3 Amac lcl|AMAG_03947T0 -1 42 42 intron2 Amac lcl|AMAG_03947T0 -1 80 80 intron3 Amac lcl|AMAG_03947T0 -1 98 98 intron1 Amac lcl|AMAG_03947T0 -1 120 120 intron2 Pbla gnl|Phybl1|14803 -1 25 25 intron3 Pbla gnl|Phybl1|14803 -1 99 99 intron3 Pbla gnl|Phybl1|14803 -1 139 139 intron2 Rory lcl|RO3G_06695 -1 1 1 intron3 Rory lcl|RO3G_06695 -1 26 26 intron3 Rory lcl|RO3G_06695 -1 58 58 intron3 Rory lcl|RO3G_06695 -1 86 86 intron3 Rory lcl|RO3G_06695 -1 126 126 intron2 Mcir gnl|Mucci2|151295 -1 1 1 intron3 Mcir gnl|Mucci2|151295 -1 26 26 intron3 Mcir gnl|Mucci2|151295 -1 52 52 intron3 Mcir gnl|Mucci2|151295 -1 80 80 intron3 Mcir gnl|Mucci2|151295 -1 120 120 intron2 Pgra lcl|PGTG_17726 -1 1 1 intron3 Pgra lcl|PGTG_17726 -1 29 29 intron3 Pgra lcl|PGTG_17726 -1 75 75 intron3 Pgra lcl|PGTG_17726 -1 93 93 intron2 Pgra lcl|PGTG_17726 -1 147 147 intron3 Mlar gnl|Mellp1|87024 -1 1 1 intron3 Mlar gnl|Mellp1|87024 -1 26 26 intron3 Mlar gnl|Mellp1|87024 -1 51 51 intron2 Mlar gnl|Mellp1|87024 -1 98 98 intron2 Mlar gnl|Mellp1|87024 -1 152 152 intron3 Sros gnl|Sporo1|19780 -1 1 1 intron3 Sros gnl|Sporo1|19780 -1 13 13 intron3 Sros gnl|Sporo1|19780 -1 26 26 intron3 Sros gnl|Sporo1|19780 -1 44 44 intron2 Sros gnl|Sporo1|19780 -1 80 80 intron3 Sros gnl|Sporo1|19780 -1 98 98 intron2 Sros gnl|Sporo1|19780 -1 105 105 intron1 Sros gnl|Sporo1|19780 -1 120 120 intron2 Sros gnl|Sporo1|19780 -1 132 132 intron3 Sros gnl|Sporo1|19780 -1 151 151 intron3 Ccin gi|169864133|ref|XP_001838679.1| -1 1 1 intron3 Ccin gi|169864133|ref|XP_001838679.1| -1 13 13 intron3 Ccin gi|169864133|ref|XP_001838679.1| -1 26 26 intron3 Ccin gi|169864133|ref|XP_001838679.1| -1 80 80 intron3 Ccin gi|169864133|ref|XP_001838679.1| -1 150 150 intron3 Abis gnl|Agabi_varbisH97_2|191429 -1 1 1 intron3 Abis gnl|Agabi_varbisH97_2|191429 -1 13 13 intron3 Abis gnl|Agabi_varbisH97_2|191429 -1 26 26 intron3 Abis gnl|Agabi_varbisH97_2|191429 -1 80 80 intron3 Abis gnl|Agabi_varbisH97_2|191429 -1 151 151 intron3 Fchr gnl|Phchr1|130223 -1 13 13 intron3 Fchr gnl|Phchr1|130223 -1 26 26 intron3 Fchr gnl|Phchr1|130223 -1 80 80 intron3 Fchr gnl|Phchr1|130223 -1 125 125 intron3 Fchr gnl|Phchr1|130223 -1 156 156 intron3 Fchr gnl|Phchr1|130223 -1 166 166 intron3 Lbic gnl|Lacbi1|318039 -1 1 1 intron3 Lbic gnl|Lacbi1|318039 -1 13 13 intron3 Lbic gnl|Lacbi1|318039 -1 26 26 intron3 Lbic gnl|Lacbi1|318039 -1 80 80 intron3 Lbic gnl|Lacbi1|318039 -1 151 151 intron3