#| ca.umontreal.iro.evolution.introns.WriteIntronTable Tue Apr 12 01:40:59 EDT 2011 #| System: Mac OS X 10.6.7 x86_64 #| Java: Java HotSpot(TM) 64-Bit Server VM 19.1-b02-334 (1.6.0_24-b07-334-10M3326) mixed mode, Apple Inc. #| Current directory: /Users/csuros/Work/introns/larger-data/denovo/census2010/pipeline/3MCMC/HTML #| Arguments: #| Input alignment: alignments/KOG0886.faa #| Intron position list parenthesis: {i .. i} #| Intron positions are relative to: sequence intron1 0,100,200 intron2 0,80,160 intron3 0,50,100 Ptet gi|145523445|ref|XP_001447561.1| -1 16 16 intron3 Ptet gi|145523445|ref|XP_001447561.1| -1 32 32 intron2 Ptet gi|145523445|ref|XP_001447561.1| -1 81 81 intron3 Tthe gi|146161229|ref|XP_976870.2| -1 13 13 intron1 Tthe gi|146161229|ref|XP_976870.2| -1 138 138 intron2 Ehis gi|67473968|ref|XP_652733.1| -1 13 13 intron1 Edis gi|167376963|ref|XP_001734232.1| -1 13 13 intron1 Ehux gnl|Emihu1|60889 -1 81 81 intron3 Tpse gi|223996063|ref|XP_002287705.1| -1 12 12 intron1 Bbov gi|156084702|ref|XP_001609834.1| -1 13 13 intron1 Tann gi|84996459|ref|XP_952951.1| -1 13 13 intron1 Tpar gi|71028548|ref|XP_763917.1| -1 13 13 intron1 Ddis gi|66806151|ref|XP_636797.1| -1 13 13 intron1 Dpur gnl|Dicpu1|49047 -1 13 13 intron1 Bden lcl|BDEG_07721 -1 13 13 intron1 Bden lcl|BDEG_07721 -1 37 37 intron3 Bden lcl|BDEG_07721 -1 98 98 intron1 Pfal gi|124506259|ref|XP_001351727.1| -1 4 4 intron1 Pyoe gi|82540651|ref|XP_724627.1| -1 13 13 intron1 Pviv gi|156095506|ref|XP_001613788.1| -1 13 13 intron1 Spur gi|115704823|ref|XP_794389.2| -1 2 2 intron1 Spur gi|115704823|ref|XP_794389.2| -1 68 68 intron3 Mbre gi|167525156|ref|XP_001746913.1| -1 13 13 intron1 Mbre gi|167525156|ref|XP_001746913.1| -1 67 67 intron2 Prsp gnl|Prsp1|PTSG_01174T0 -1 13 13 intron1 Prsp gnl|Prsp1|PTSG_01174T0 -1 67 67 intron2 Prsp gnl|Prsp1|PTSG_01174T0 -1 98 98 intron1 Prsp gnl|Prsp1|PTSG_01174T0 -1 130 130 intron3 Prsp gnl|Prsp1|PTSG_01174T0 -1 158 158 intron1 Tgon gi|237840401|ref|XP_002369498.1| -1 13 13 intron1 Tgon gi|237840401|ref|XP_002369498.1| -1 90 90 intron2 Tgon gi|237840401|ref|XP_002369498.1| -1 136 136 intron2 Hrob gnl|Helro1|157124 -1 13 13 intron1 Hrob gnl|Helro1|157124 -1 23 23 intron1 Hrob gnl|Helro1|157124 -1 72 72 intron1 Hrob gnl|Helro1|157124 -1 108 108 intron1 C169 gnl|Coc_C169_1|55030 -1 41 41 intron3 C169 gnl|Coc_C169_1|55030 -1 95 95 intron3 C169 gnl|Coc_C169_1|55030 -1 155 155 intron3 Ppat gi|168014142|ref|XP_001759613.1| -1 19 19 intron1 Ppat gi|168014142|ref|XP_001759613.1| -1 69 69 intron3 Spun lcl|SPPG_07902T0 -1 13 13 intron1 Spun lcl|SPPG_07902T0 -1 37 37 intron3 Spun lcl|SPPG_07902T0 -1 98 98 intron1 Spun lcl|SPPG_07902T0 -1 158 158 intron3 Amac gnl|Amac3|AMAG_01274T0 -1 13 13 intron1 Amac gnl|Amac3|AMAG_01274T0 -1 37 37 intron3 Sjap gi|213404586|ref|XP_002173065.1| -1 4 4 intron3 Sjap gi|213404586|ref|XP_002173065.1| -1 162 162 intron1 Spom gi|19075397|ref|NP_587897.1| -1 4 4 intron3 Pbla gnl|Phybl1|39951 -1 19 19 intron1 Pbla gnl|Phybl1|39951 -1 163 163 intron3 Rory lcl|RO3G_10686 -1 19 19 intron1 Rory lcl|RO3G_10686 -1 29 29 intron1 Rory lcl|RO3G_10686 -1 163 163 intron3 Mcir gnl|Mucci2|156623 -1 19 19 intron2 Mcir gnl|Mucci2|156623 -1 29 29 intron1 Mcir gnl|Mucci2|156623 -1 98 98 intron1 Mcir gnl|Mucci2|156623 -1 163 163 intron3 Sros gnl|Sporo1|30194 -1 11 11 intron3 Sros gnl|Sporo1|30194 -1 23 23 intron3 Sros gnl|Sporo1|30194 -1 37 37 intron3 Bfuc gi|154316163|ref|XP_001557403.1| -1 2 2 intron1 Bfuc gi|154316163|ref|XP_001557403.1| -1 13 13 intron2 Bfuc gi|154316163|ref|XP_001557403.1| -1 53 53 intron3 Bfuc gi|154316163|ref|XP_001557403.1| -1 162 162 intron1 Sscl gi|156037530|ref|XP_001586492.1| -1 2 2 intron1 Sscl gi|156037530|ref|XP_001586492.1| -1 13 13 intron2 Sscl gi|156037530|ref|XP_001586492.1| -1 53 53 intron3 Sscl gi|156037530|ref|XP_001586492.1| -1 162 162 intron1 Pnod gi|169617868|ref|XP_001802348.1| -1 2 2 intron1 Pnod gi|169617868|ref|XP_001802348.1| -1 41 41 intron1 Chet gnl|CocheC5_1|113785 -1 2 2 intron1 Chet gnl|CocheC5_1|113785 -1 41 41 intron1 Chet gnl|CocheC5_1|113785 -1 162 162 intron1 Prep gi|189200521|ref|XP_001936597.1| -1 2 2 intron1 Prep gi|189200521|ref|XP_001936597.1| -1 41 41 intron1 Prep gi|189200521|ref|XP_001936597.1| -1 162 162 intron1 Mfij gnl|Mycfi1|59293 -1 2 2 intron1 Mfij gnl|Mycfi1|59293 -1 53 53 intron3 Mgra gnl|Mycgr3|105843 -1 2 2 intron1 Mgra gnl|Mycgr3|105843 -1 53 53 intron3 Anid gi|67515961|ref|XP_657866.1| -1 2 2 intron1 Anid gi|67515961|ref|XP_657866.1| -1 13 13 intron2 Anid gi|67515961|ref|XP_657866.1| -1 53 53 intron3 Anid gi|67515961|ref|XP_657866.1| -1 162 162 intron1 Cimm gi|119189527|ref|XP_001245370.1| -1 2 2 intron1 Cimm gi|119189527|ref|XP_001245370.1| -1 13 13 intron2 Cimm gi|119189527|ref|XP_001245370.1| -1 53 53 intron3 Cimm gi|119189527|ref|XP_001245370.1| -1 162 162 intron1 Ncra gi|85102845|ref|XP_961403.1| -1 2 2 intron1 Ncra gi|85102845|ref|XP_961403.1| -1 13 13 intron2 Ncra gi|85102845|ref|XP_961403.1| -1 53 53 intron3 Ncra gi|85102845|ref|XP_961403.1| -1 162 162 intron1 Mgri gi|145605732|ref|XP_370398.2| -1 2 2 intron1 Mgri gi|145605732|ref|XP_370398.2| -1 13 13 intron2 Mgri gi|145605732|ref|XP_370398.2| -1 53 53 intron3 Mgri gi|145605732|ref|XP_370398.2| -1 162 162 intron1 Cneo gi|134108823|ref|XP_776526.1| -1 11 11 intron3 Cneo gi|134108823|ref|XP_776526.1| -1 37 37 intron3 Cneo gi|134108823|ref|XP_776526.1| -1 67 67 intron2 Cneo gi|134108823|ref|XP_776526.1| -1 111 111 intron3 Mlar gnl|Mellp1|52368 -1 4 4 intron3 Mlar gnl|Mellp1|52368 -1 37 37 intron3 Mlar gnl|Mellp1|52368 -1 87 87 intron1 Pgra lcl|PGTG_14971 -1 4 4 intron3 Pgra lcl|PGTG_14971 -1 37 37 intron3 Pgra lcl|PGTG_14971 -1 87 87 intron1 Umay gi|71013111|ref|XP_758556.1| -1 11 11 intron3 Umay gi|71013111|ref|XP_758556.1| -1 54 54 intron2 Umay gi|71013111|ref|XP_758556.1| -1 98 98 intron3 Ccin gi|169847476|ref|XP_001830449.1| -1 5 5 intron3 Ccin gi|169847476|ref|XP_001830449.1| -1 37 37 intron3 Ccin gi|169847476|ref|XP_001830449.1| -1 87 87 intron1 Fchr gnl|Phchr1|140769 -1 5 5 intron3 Fchr gnl|Phchr1|140769 -1 37 37 intron3 Fchr gnl|Phchr1|140769 -1 87 87 intron1 Fchr gnl|Phchr1|140769 -1 164 164 intron3 Abis gnl|Agabi_varbisH97_2|136019 -1 5 5 intron3 Abis gnl|Agabi_varbisH97_2|136019 -1 37 37 intron3 Abis gnl|Agabi_varbisH97_2|136019 -1 87 87 intron1 Lbic gnl|Lacbi1|294076 -1 5 5 intron3 Lbic gnl|Lacbi1|294076 -1 37 37 intron3 Lbic gnl|Lacbi1|294076 -1 87 87 intron1 Lgig gnl|Lotgi1|217320 -1 13 13 intron1 Lgig gnl|Lotgi1|217320 -1 37 37 intron3 Lgig gnl|Lotgi1|217320 -1 98 98 intron1 Lgig gnl|Lotgi1|217320 -1 134 134 intron1 Lgig gnl|Lotgi1|217320 -1 164 164 intron3 Sman gi|256072841|ref|XP_002572742.1| -1 13 13 intron1 Hmag gi|221114780|ref|XP_002162146.1| -1 13 13 intron1 Hmag gi|221114780|ref|XP_002162146.1| -1 37 37 intron3 Hmag gi|221114780|ref|XP_002162146.1| -1 163 163 intron3 Tadh gi|195997507|ref|XP_002108622.1| -1 13 13 intron1 Tadh gi|195997507|ref|XP_002108622.1| -1 37 37 intron3 Tadh gi|195997507|ref|XP_002108622.1| -1 98 98 intron1 Tadh gi|195997507|ref|XP_002108622.1| -1 164 164 intron3 Cbri gi|268552507|ref|XP_002634236.1| -1 13 13 intron1 Cbri gi|268552507|ref|XP_002634236.1| -1 98 98 intron1 Cbri gi|268552507|ref|XP_002634236.1| -1 134 134 intron1 Cele gi|17541134|ref|NP_502542.1| -1 13 13 intron1 Cele gi|17541134|ref|NP_502542.1| -1 98 98 intron1 Cele gi|17541134|ref|NP_502542.1| -1 134 134 intron1 Bmal gi|170574576|ref|XP_001892875.1| -1 13 13 intron1 Bmal gi|170574576|ref|XP_001892875.1| -1 37 37 intron3 Bmal gi|170574576|ref|XP_001892875.1| -1 98 98 intron1 Bmal gi|170574576|ref|XP_001892875.1| -1 134 134 intron1 Dpul gnl|Dappu1|306294 -1 13 13 intron1 Dpul gnl|Dappu1|306294 -1 37 37 intron3 Dpul gnl|Dappu1|306294 -1 98 98 intron1 Dpul gnl|Dappu1|306294 -1 137 137 intron3 Apis gi|187179331|ref|NP_001119643.1| -1 13 13 intron1 Apis gi|187179331|ref|NP_001119643.1| -1 37 37 intron3 Apis gi|187179331|ref|NP_001119643.1| -1 98 98 intron1 Apis gi|187179331|ref|NP_001119643.1| -1 137 137 intron3 Isca gi|241998774|ref|XP_002434030.1| -1 13 13 intron1 Isca gi|241998774|ref|XP_002434030.1| -1 37 37 intron3 Isca gi|241998774|ref|XP_002434030.1| -1 98 98 intron1 Isca gi|241998774|ref|XP_002434030.1| -1 164 164 intron3 Bmor gnl|Bmor|BGIBMGA003978-PA -1 13 13 intron1 Bmor gnl|Bmor|BGIBMGA003978-PA -1 37 37 intron3 Bmor gnl|Bmor|BGIBMGA003978-PA -1 98 98 intron1 Nvec gi|156408806|ref|XP_001642047.1| -1 13 13 intron1 Nvec gi|156408806|ref|XP_001642047.1| -1 37 37 intron3 Nvec gi|156408806|ref|XP_001642047.1| -1 98 98 intron1 Amel gi|66564518|ref|XP_623110.1| -1 13 13 intron1 Amel gi|66564518|ref|XP_623110.1| -1 37 37 intron3 Phum gi|242009369|ref|XP_002425460.1| -1 13 13 intron1 Phum gi|242009369|ref|XP_002425460.1| -1 37 37 intron3 Phum gi|242009369|ref|XP_002425460.1| -1 137 137 intron3 Nvit gi|156549881|ref|XP_001605642.1| -1 13 13 intron1 Nvit gi|156549881|ref|XP_001605642.1| -1 37 37 intron3 Agam gi|58392254|ref|XP_319222.2| -1 13 13 intron1 Agam gi|58392254|ref|XP_319222.2| -1 37 37 intron3 Agam gi|58392254|ref|XP_319222.2| -1 98 98 intron1 Tcas gi|91087257|ref|XP_975530.1| -1 13 13 intron1 Tcas gi|91087257|ref|XP_975530.1| -1 37 37 intron3 Tcas gi|91087257|ref|XP_975530.1| -1 98 98 intron1 Dmel gi|24762533|ref|NP_726412.1| -1 13 13 intron1 Dmel gi|24762533|ref|NP_726412.1| -1 37 37 intron3 Dmel gi|24762533|ref|NP_726412.1| -1 98 98 intron1 Dmoj gi|195122700|ref|XP_002005849.1| -1 13 13 intron1 Dmoj gi|195122700|ref|XP_002005849.1| -1 37 37 intron3 Dmoj gi|195122700|ref|XP_002005849.1| -1 98 98 intron1