#| ca.umontreal.iro.evolution.introns.WriteIntronTable Tue Apr 12 01:40:59 EDT 2011 #| System: Mac OS X 10.6.7 x86_64 #| Java: Java HotSpot(TM) 64-Bit Server VM 19.1-b02-334 (1.6.0_24-b07-334-10M3326) mixed mode, Apple Inc. #| Current directory: /Users/csuros/Work/introns/larger-data/denovo/census2010/pipeline/3MCMC/HTML #| Arguments: #| Input alignment: alignments/KOG0893.faa #| Intron position list parenthesis: {i .. i} #| Intron positions are relative to: sequence intron1 0,100,200 intron2 0,80,160 intron3 0,50,100 Ptet gi|145535886|ref|XP_001453676.1| -1 160 160 intron3 Ptet gi|145535886|ref|XP_001453676.1| -1 299 299 intron1 Pyoe gi|83318078|ref|XP_731438.1| -1 27 27 intron1 Pyoe gi|83318078|ref|XP_731438.1| -1 77 77 intron3 Pfal gi|124505997|ref|XP_001351596.1| -1 4 4 intron1 Pfal gi|124505997|ref|XP_001351596.1| -1 55 55 intron3 Pviv gi|156094350|ref|XP_001613212.1| -1 4 4 intron1 Pviv gi|156094350|ref|XP_001613212.1| -1 54 54 intron3 Bbov gi|156086734|ref|XP_001610775.1| -1 4 4 intron1 Bbov gi|156086734|ref|XP_001610775.1| -1 53 53 intron3 Tann gi|84998260|ref|XP_953851.1| -1 54 54 intron3 Tpar gi|71033607|ref|XP_766445.1| -1 4 4 intron1 Tpar gi|71033607|ref|XP_766445.1| -1 53 53 intron3 Pbla gnl|Phybl1|57935 -1 114 114 intron1 Scer gi|6320128|ref|NP_010208.1| -1 19 19 intron3 Sjap gi|213406351|ref|XP_002173947.1| -1 49 49 intron3 Spom gi|19115738|ref|NP_594826.1| -1 49 49 intron3 Bfuc gi|154320588|ref|XP_001559610.1| -1 32 32 intron3 Bfuc gi|154320588|ref|XP_001559610.1| -1 57 57 intron3 Sscl gi|156040321|ref|XP_001587147.1| -1 32 32 intron3 Sscl gi|156040321|ref|XP_001587147.1| -1 57 57 intron3 Uree gi|258567892|ref|XP_002584690.1| -1 30 30 intron3 Uree gi|258567892|ref|XP_002584690.1| -1 55 55 intron3 Mfij gnl|Mycfi1|72681 -1 35 35 intron3 Mfij gnl|Mycfi1|72681 -1 60 60 intron3 Mgra gnl|Mycgr3|106407 -1 34 34 intron3 Mgra gnl|Mycgr3|106407 -1 59 59 intron3 Pnod gi|169604644|ref|XP_001795743.1| -1 35 35 intron3 Pnod gi|169604644|ref|XP_001795743.1| -1 60 60 intron3 Chet gnl|CocheC5_1|118296 -1 36 36 intron3 Chet gnl|CocheC5_1|118296 -1 61 61 intron3 Prep gi|189196430|ref|XP_001934553.1| -1 36 36 intron3 Prep gi|189196430|ref|XP_001934553.1| -1 61 61 intron3 Mgri gi|39943294|ref|XP_361184.1| -1 32 32 intron3 Mgri gi|39943294|ref|XP_361184.1| -1 57 57 intron3 Gzea gi|46109244|ref|XP_381680.1| -1 31 31 intron3 Gzea gi|46109244|ref|XP_381680.1| -1 56 56 intron3 Ncra gi|85117396|ref|XP_965247.1| -1 30 30 intron3 Ncra gi|85117396|ref|XP_965247.1| -1 55 55 intron3 Amac lcl|AMAG_10832T0 -1 30 30 intron2 Spun lcl|SPPG_05403T0 -1 15 15 intron3 Spun lcl|SPPG_05403T0 -1 32 32 intron2 Spun lcl|SPPG_05403T0 -1 112 112 intron1 Bden lcl|BDEG_00374 -1 15 15 intron3 Bden lcl|BDEG_00374 -1 32 32 intron2 Bden lcl|BDEG_00374 -1 112 112 intron1 Cneo gi|134107313|ref|XP_777541.1| -1 1 1 intron3 Cneo gi|134107313|ref|XP_777541.1| -1 8 8 intron3 Cneo gi|134107313|ref|XP_777541.1| -1 40 40 intron1 Cneo gi|134107313|ref|XP_777541.1| -1 115 115 intron3 Mlar gnl|Mellp1|74257 -1 37 37 intron3 Mlar gnl|Mellp1|74257 -1 87 87 intron1 Mlar gnl|Mellp1|74257 -1 108 108 intron3 Pgra lcl|PGTG_18484 -1 38 38 intron3 Pgra lcl|PGTG_18484 -1 88 88 intron1 Pgra lcl|PGTG_18484 -1 113 113 intron3 Sros gnl|Sporo1|7769 -1 104 104 intron3 Fchr gnl|Phchr1|3788 -1 1 1 intron3 Fchr gnl|Phchr1|3788 -1 9 9 intron3 Fchr gnl|Phchr1|3788 -1 90 90 intron1 Fchr gnl|Phchr1|3788 -1 115 115 intron3 Abis gnl|Agabi_varbisH97_2|138375 -1 1 1 intron3 Abis gnl|Agabi_varbisH97_2|138375 -1 9 9 intron3 Abis gnl|Agabi_varbisH97_2|138375 -1 91 91 intron1 Abis gnl|Agabi_varbisH97_2|138375 -1 116 116 intron3 Lbic gnl|Lacbi1|185678 -1 1 1 intron3 Lbic gnl|Lacbi1|185678 -1 9 9 intron3 Lbic gnl|Lacbi1|185678 -1 91 91 intron1 Lbic gnl|Lacbi1|185678 -1 116 116 intron3 Ccin gi|169862772|ref|XP_001838010.1| -1 1 1 intron3 Ccin gi|169862772|ref|XP_001838010.1| -1 8 8 intron3 Ccin gi|169862772|ref|XP_001838010.1| -1 90 90 intron1 Ccin gi|169862772|ref|XP_001838010.1| -1 115 115 intron3 Cowc gnl|Cowc1|CAOG_06853T0 -1 2 2 intron3 Tgon gi|237838817|ref|XP_002368706.1| -1 3 3 intron1 Tgon gi|237838817|ref|XP_002368706.1| -1 55 55 intron3 C64A gnl|ChlNC64A_1|20549 -1 64 64 intron3 C64A gnl|ChlNC64A_1|20549 -1 88 88 intron3 C169 gnl|Coc_C169_1|22698 -1 65 65 intron3 C169 gnl|Coc_C169_1|22698 -1 89 89 intron3 Crei gi|159465425|ref|XP_001690923.1| -1 90 90 intron3 Vcar gnl|Volca1|103828 -1 90 90 intron3 Ppat gi|168009682|ref|XP_001757534.1| -1 28 28 intron2 Otau gnl|Ostta4|29038 -1 38 38 intron3 Otau gnl|Ostta4|29038 -1 69 69 intron3 O809 gnl|OstRCC809_2|36508 -1 38 38 intron3 O809 gnl|OstRCC809_2|36508 -1 69 69 intron3 Oluc gi|145351574|ref|XP_001420147.1| -1 38 38 intron3 Oluc gi|145351574|ref|XP_001420147.1| -1 69 69 intron3 M299 gi|255079822|ref|XP_002503491.1| -1 35 35 intron3 M299 gi|255079822|ref|XP_002503491.1| -1 66 66 intron3 M299 gi|255079822|ref|XP_002503491.1| -1 86 86 intron3 Mpus gnl|MicpuC2|24390 -1 35 35 intron3 Mpus gnl|MicpuC2|24390 -1 66 66 intron3 Mpus gnl|MicpuC2|24390 -1 86 86 intron3 Ddis gi|66815859|ref|XP_641946.1| -1 22 22 intron2 Dpur gnl|Dicpu1|95827 -1 20 20 intron2 Pram gnl|Phyra1_1|71920 -1 32 32 intron2 Pcap gnl|PhycaF7|106316 -1 32 32 intron2 Psoj gnl|Physo1_1|109268 -1 32 32 intron2 Prsp gnl|Prsp1|PTSG_07203T0 -1 27 27 intron2 Prsp gnl|Prsp1|PTSG_07203T0 -1 46 46 intron3 Prsp gnl|Prsp1|PTSG_07203T0 -1 107 107 intron1 Lgig gnl|Lotgi1|200036 -1 33 33 intron2 Lgig gnl|Lotgi1|200036 -1 75 75 intron2 Lgig gnl|Lotgi1|200036 -1 113 113 intron1 Sman gi|256080116|ref|XP_002576329.1| -1 66 66 intron2 Mbre gi|167523932|ref|XP_001746302.1| -1 19 19 intron2 Mbre gi|167523932|ref|XP_001746302.1| -1 38 38 intron3 Cbri gi|268570160|ref|XP_002640706.1| -1 32 32 intron2 Cele gi|17508683|ref|NP_493391.1| -1 32 32 intron2 Bmal gi|170593261|ref|XP_001901383.1| -1 20 20 intron2 Bmal gi|170593261|ref|XP_001901383.1| -1 60 60 intron2 Bmal gi|170593261|ref|XP_001901383.1| -1 102 102 intron2 Tadh gi|196012421|ref|XP_002116073.1| -1 32 32 intron2 Tadh gi|196012421|ref|XP_002116073.1| -1 74 74 intron2 Tadh gi|196012421|ref|XP_002116073.1| -1 112 112 intron1 Hmag gi|221121130|ref|XP_002160781.1| -1 34 34 intron2 Hmag gi|221121130|ref|XP_002160781.1| -1 76 76 intron2 Hmag gi|221121130|ref|XP_002160781.1| -1 114 114 intron1 Cint gi|198434168|ref|XP_002129027.1| -1 35 35 intron2 Cint gi|198434168|ref|XP_002129027.1| -1 77 77 intron2 Spur gi|72153924|ref|XP_793832.1| -1 34 34 intron2 Spur gi|72153924|ref|XP_793832.1| -1 76 76 intron2 Spur gi|72153924|ref|XP_793832.1| -1 114 114 intron1 Nvec gi|156382415|ref|XP_001632549.1| -1 33 33 intron2 Nvec gi|156382415|ref|XP_001632549.1| -1 75 75 intron2 Nvec gi|156382415|ref|XP_001632549.1| -1 113 113 intron1 Bflo gi|260833520|ref|XP_002611705.1| -1 34 34 intron2 Bflo gi|260833520|ref|XP_002611705.1| -1 76 76 intron2 Bflo gi|260833520|ref|XP_002611705.1| -1 114 114 intron1 Drer gi|91176310|ref|NP_001035141.1| -1 34 34 intron2 Drer gi|91176310|ref|NP_001035141.1| -1 76 76 intron2 Drer gi|91176310|ref|NP_001035141.1| -1 114 114 intron1 Ggal gi|118084259|ref|XP_416909.2| -1 36 36 intron2 Ggal gi|118084259|ref|XP_416909.2| -1 78 78 intron2 Ggal gi|118084259|ref|XP_416909.2| -1 116 116 intron1 Hsap gi|4506633|ref|NP_000984.1| -1 36 36 intron2 Hsap gi|4506633|ref|NP_000984.1| -1 78 78 intron2 Hsap gi|4506633|ref|NP_000984.1| -1 116 116 intron1 Tgut gi|224042954|ref|XP_002196116.1| -1 36 36 intron2 Tgut gi|224042954|ref|XP_002196116.1| -1 78 78 intron2 Tgut gi|224042954|ref|XP_002196116.1| -1 116 116 intron1 Dpul gnl|Dappu1|227532 -1 75 75 intron2 Apis gi|187127218|ref|NP_001119660.1| -1 75 75 intron2 Phum gi|242006003|ref|XP_002423848.1| -1 75 75 intron2 Amel gi|48142237|ref|XP_397314.1| -1 74 74 intron2 Nvit gi|156551942|ref|XP_001607790.1| -1 75 75 intron2 Bmor gnl|Bmor|BGIBMGA000959-PA -1 75 75 intron2 Tcas gi|91081477|ref|XP_974326.1| -1 75 75 intron2 Isca gi|241122570|ref|XP_002403582.1| -1 79 79 intron2 Isca gi|241122570|ref|XP_002403582.1| -1 117 117 intron1 Aaeg gi|157114043|ref|XP_001657955.1| -1 75 75 intron2 Agam gi|58394271|ref|XP_320630.2| -1 75 75 intron2 Dmel gi|19921922|ref|NP_610503.1| -1 75 75 intron2 Dmoj gi|195124547|ref|XP_002006753.1| -1 75 75 intron2 CspI gnl|Capca1|178170 -1 33 33 intron2 CspI gnl|Capca1|178170 -1 113 113 intron1 Hrob gnl|Helro1|184866 -1 33 33 intron2 Hrob gnl|Helro1|184866 -1 75 75 intron2 Hrob gnl|Helro1|184866 -1 113 113 intron1