#| ca.umontreal.iro.evolution.introns.WriteIntronTable Tue Apr 12 01:41:00 EDT 2011 #| System: Mac OS X 10.6.7 x86_64 #| Java: Java HotSpot(TM) 64-Bit Server VM 19.1-b02-334 (1.6.0_24-b07-334-10M3326) mixed mode, Apple Inc. #| Current directory: /Users/csuros/Work/introns/larger-data/denovo/census2010/pipeline/3MCMC/HTML #| Arguments: #| Input alignment: alignments/KOG0896.faa #| Intron position list parenthesis: {i .. i} #| Intron positions are relative to: sequence intron1 0,100,200 intron2 0,80,160 intron3 0,50,100 Ehux gnl|Emihu1|416247 -1 26 26 intron3 Ehux gnl|Emihu1|416247 -1 45 45 intron2 Ehux gnl|Emihu1|416247 -1 59 59 intron3 Ehux gnl|Emihu1|416247 -1 81 81 intron3 Tgon gi|237829905|ref|XP_002364250.1| -1 62 62 intron3 Tgon gi|237829905|ref|XP_002364250.1| -1 112 112 intron3 Tgon gi|237829905|ref|XP_002364250.1| -1 153 153 intron3 Pyoe gi|82596826|ref|XP_726422.1| -1 6 6 intron3 Pyoe gi|82596826|ref|XP_726422.1| -1 96 96 intron3 Pfal gi|124504781|ref|XP_001351133.1| -1 3 3 intron3 Pfal gi|124504781|ref|XP_001351133.1| -1 93 93 intron3 Pviv gi|156094083|ref|XP_001613079.1| -1 3 3 intron3 Pviv gi|156094083|ref|XP_001613079.1| -1 93 93 intron3 Tpar gi|71026801|ref|XP_763044.1| -1 3 3 intron3 Tpar gi|71026801|ref|XP_763044.1| -1 52 52 intron3 Bbov gi|156088255|ref|XP_001611534.1| -1 52 52 intron3 Bbov gi|156088255|ref|XP_001611534.1| -1 93 93 intron3 Tann gi|85000053|ref|XP_954745.1| -1 3 3 intron3 Tann gi|85000053|ref|XP_954745.1| -1 52 52 intron3 Tann gi|85000053|ref|XP_954745.1| -1 93 93 intron3 Ddis gi|66801177|ref|XP_629514.1| -1 50 50 intron3 Dpur gnl|Dicpu1|26622 -1 50 50 intron3 M299 gi|255069917|ref|XP_002507040.1| -1 41 41 intron1 Mpus gnl|MicpuC2|23938 -1 41 41 intron1 Tpse gi|224003237|ref|XP_002291290.1| -1 58 58 intron3 Tthe gi|146183518|ref|XP_001026380.2| -1 2 2 intron1 Tthe gi|146183518|ref|XP_001026380.2| -1 7 7 intron1 Tthe gi|146183518|ref|XP_001026380.2| -1 37 37 intron1 Tthe gi|146183518|ref|XP_001026380.2| -1 54 54 intron3 Tthe gi|146183518|ref|XP_001026380.2| -1 96 96 intron3 Ptet gi|145476079|ref|XP_001424062.1| -1 6 6 intron1 Ptet gi|145476079|ref|XP_001424062.1| -1 36 36 intron1 Ptet gi|145476079|ref|XP_001424062.1| -1 53 53 intron3 Ptet gi|145476079|ref|XP_001424062.1| -1 94 94 intron3 Ncra gi|164425501|ref|XP_001728241.1| -1 26 26 intron1 Ncra gi|164425501|ref|XP_001728241.1| -1 52 52 intron3 Ncra gi|164425501|ref|XP_001728241.1| -1 135 135 intron2 Smoe gnl|Selmo1|154323 -1 13 13 intron1 Smoe gnl|Selmo1|154323 -1 59 59 intron3 Smoe gnl|Selmo1|154323 -1 101 101 intron3 Ppat gi|168059595|ref|XP_001781787.1| -1 47 47 intron3 Ppat gi|168059595|ref|XP_001781787.1| -1 89 89 intron3 Atha gi|18409647|ref|NP_564994.1| -1 10 10 intron1 Atha gi|18409647|ref|NP_564994.1| -1 56 56 intron3 Atha gi|18409647|ref|NP_564994.1| -1 98 98 intron3 Atha gi|18409647|ref|NP_564994.1| -1 141 141 intron1 Vvin gi|225424357|ref|XP_002284969.1| -1 10 10 intron1 Vvin gi|225424357|ref|XP_002284969.1| -1 56 56 intron3 Vvin gi|225424357|ref|XP_002284969.1| -1 98 98 intron3 Vvin gi|225424357|ref|XP_002284969.1| -1 141 141 intron1 Sbic gi|242038365|ref|XP_002466577.1| -1 12 12 intron1 Sbic gi|242038365|ref|XP_002466577.1| -1 58 58 intron3 Sbic gi|242038365|ref|XP_002466577.1| -1 100 100 intron3 Sbic gi|242038365|ref|XP_002466577.1| -1 143 143 intron1 Osat gi|115454925|ref|NP_001051063.1| -1 12 12 intron1 Osat gi|115454925|ref|NP_001051063.1| -1 58 58 intron3 Osat gi|115454925|ref|NP_001051063.1| -1 100 100 intron3 Osat gi|115454925|ref|NP_001051063.1| -1 143 143 intron1 C64A gnl|ChlNC64A_1|134163 -1 9 9 intron1 C64A gnl|ChlNC64A_1|134163 -1 58 58 intron3 C64A gnl|ChlNC64A_1|134163 -1 79 79 intron3 C169 gnl|Coc_C169_1|22787 -1 9 9 intron1 C169 gnl|Coc_C169_1|22787 -1 55 55 intron3 C169 gnl|Coc_C169_1|22787 -1 76 76 intron3 C169 gnl|Coc_C169_1|22787 -1 96 96 intron3 Cowc lcl|CAOG_06796T0 -1 11 11 intron1 Cowc lcl|CAOG_06796T0 -1 57 57 intron3 Cowc lcl|CAOG_06796T0 -1 99 99 intron3 Pram gnl|Phyra1_1|71416 -1 8 8 intron1 Pram gnl|Phyra1_1|71416 -1 54 54 intron3 Psoj gnl|Physo1_1|128925 -1 11 11 intron1 Psoj gnl|Physo1_1|128925 -1 57 57 intron3 Umay gi|71020971|ref|XP_760716.1| -1 4 4 intron1 Umay gi|71020971|ref|XP_760716.1| -1 37 37 intron1 Umay gi|71020971|ref|XP_760716.1| -1 118 118 intron2 Cneo gi|58268678|ref|XP_571495.1| -1 4 4 intron1 Cneo gi|58268678|ref|XP_571495.1| -1 70 70 intron1 Cneo gi|58268678|ref|XP_571495.1| -1 91 91 intron3 Cneo gi|58268678|ref|XP_571495.1| -1 118 118 intron2 Scer gi|6321351|ref|NP_011428.1| -1 4 4 intron2 Mlar gnl|Mellp1|87802 -1 6 6 intron1 Mlar gnl|Mellp1|87802 -1 15 15 intron3 Mlar gnl|Mellp1|87802 -1 52 52 intron3 Mlar gnl|Mellp1|87802 -1 94 94 intron3 Mlar gnl|Mellp1|87802 -1 121 121 intron2 Pgra lcl|PGTG_19485 -1 6 6 intron1 Pgra lcl|PGTG_19485 -1 15 15 intron3 Pgra lcl|PGTG_19485 -1 52 52 intron3 Pgra lcl|PGTG_19485 -1 94 94 intron3 Pgra lcl|PGTG_19485 -1 121 121 intron2 Sjap gi|213406661|ref|XP_002174102.1| -1 4 4 intron2 Sjap gi|213406661|ref|XP_002174102.1| -1 50 50 intron3 Sjap gi|213406661|ref|XP_002174102.1| -1 92 92 intron3 Sjap gi|213406661|ref|XP_002174102.1| -1 119 119 intron2 Spom gi|19075662|ref|NP_588162.1| -1 4 4 intron2 Spom gi|19075662|ref|NP_588162.1| -1 50 50 intron3 Spom gi|19075662|ref|NP_588162.1| -1 92 92 intron3 Spom gi|19075662|ref|NP_588162.1| -1 119 119 intron2 Pbla gnl|Phybl1|37926 -1 4 4 intron1 Pbla gnl|Phybl1|37926 -1 49 49 intron3 Pbla gnl|Phybl1|37926 -1 91 91 intron3 Pbla gnl|Phybl1|37926 -1 118 118 intron2 Rory lcl|RO3G_07503 -1 4 4 intron1 Rory lcl|RO3G_07503 -1 49 49 intron3 Rory lcl|RO3G_07503 -1 91 91 intron3 Rory lcl|RO3G_07503 -1 118 118 intron2 Mcir gnl|Mucci2|179171 -1 4 4 intron1 Mcir gnl|Mucci2|179171 -1 49 49 intron3 Mcir gnl|Mucci2|179171 -1 91 91 intron3 Mcir gnl|Mucci2|179171 -1 118 118 intron2 Sros gnl|Sporo1|33031 -1 4 4 intron1 Sros gnl|Sporo1|33031 -1 50 50 intron3 Sros gnl|Sporo1|33031 -1 92 92 intron3 Sros gnl|Sporo1|33031 -1 119 119 intron2 Amac gnl|Amac3|AMAG_00237T0 -1 4 4 intron1 Amac gnl|Amac3|AMAG_00237T0 -1 20 20 intron1 Amac gnl|Amac3|AMAG_00237T0 -1 50 50 intron3 Amac gnl|Amac3|AMAG_00237T0 -1 92 92 intron3 Amac gnl|Amac3|AMAG_00237T0 -1 119 119 intron2 Abis gnl|Agabi_varbisH97_2|193496 -1 4 4 intron1 Abis gnl|Agabi_varbisH97_2|193496 -1 50 50 intron3 Abis gnl|Agabi_varbisH97_2|193496 -1 119 119 intron2 Fchr gnl|Phchr1|2075 -1 4 4 intron1 Fchr gnl|Phchr1|2075 -1 50 50 intron3 Fchr gnl|Phchr1|2075 -1 119 119 intron2 Ccin gi|169850276|ref|XP_001831835.1| -1 4 4 intron1 Ccin gi|169850276|ref|XP_001831835.1| -1 50 50 intron3 Ccin gi|169850276|ref|XP_001831835.1| -1 119 119 intron2 Lbic gnl|Lacbi1|185971 -1 4 4 intron1 Lbic gnl|Lacbi1|185971 -1 50 50 intron3 Lbic gnl|Lacbi1|185971 -1 119 119 intron2 Bden lcl|BDEG_01504 -1 4 4 intron1 Bden lcl|BDEG_01504 -1 50 50 intron3 Bden lcl|BDEG_01504 -1 92 92 intron3 Bden lcl|BDEG_01504 -1 117 117 intron2 Spun lcl|SPPG_04246T0 -1 4 4 intron1 Spun lcl|SPPG_04246T0 -1 50 50 intron3 Spun lcl|SPPG_04246T0 -1 92 92 intron3 Spun lcl|SPPG_04246T0 -1 117 117 intron2 Gzea gi|46134315|ref|XP_389471.1| -1 58 58 intron2 Bfuc gi|154323274|ref|XP_001560951.1| -1 24 24 intron1 Bfuc gi|154323274|ref|XP_001560951.1| -1 50 50 intron3 Bfuc gi|154323274|ref|XP_001560951.1| -1 91 91 intron3 Bfuc gi|154323274|ref|XP_001560951.1| -1 118 118 intron2 Sscl gi|156058003|ref|XP_001594925.1| -1 28 28 intron1 Sscl gi|156058003|ref|XP_001594925.1| -1 54 54 intron3 Sscl gi|156058003|ref|XP_001594925.1| -1 95 95 intron3 Sscl gi|156058003|ref|XP_001594925.1| -1 122 122 intron2 Pnod gi|169608153|ref|XP_001797496.1| -1 25 25 intron1 Pnod gi|169608153|ref|XP_001797496.1| -1 51 51 intron3 Pnod gi|169608153|ref|XP_001797496.1| -1 93 93 intron3 Pnod gi|169608153|ref|XP_001797496.1| -1 120 120 intron2 Chet gnl|CocheC5_1|25312 -1 25 25 intron1 Chet gnl|CocheC5_1|25312 -1 51 51 intron3 Chet gnl|CocheC5_1|25312 -1 93 93 intron3 Chet gnl|CocheC5_1|25312 -1 120 120 intron2 Prep gi|189189636|ref|XP_001931157.1| -1 25 25 intron1 Prep gi|189189636|ref|XP_001931157.1| -1 51 51 intron3 Prep gi|189189636|ref|XP_001931157.1| -1 93 93 intron3 Prep gi|189189636|ref|XP_001931157.1| -1 120 120 intron2 Mfij gnl|Mycfi1|48671 -1 25 25 intron1 Mfij gnl|Mycfi1|48671 -1 51 51 intron3 Mfij gnl|Mycfi1|48671 -1 93 93 intron3 Mgra gnl|Mycgr3|102897 -1 25 25 intron1 Mgra gnl|Mycgr3|102897 -1 51 51 intron3 Mgra gnl|Mycgr3|102897 -1 93 93 intron3 Anid gi|67526373|ref|XP_661248.1| -1 27 27 intron1 Anid gi|67526373|ref|XP_661248.1| -1 53 53 intron3 Anid gi|67526373|ref|XP_661248.1| -1 95 95 intron3 Anid gi|67526373|ref|XP_661248.1| -1 122 122 intron2 Cimm gi|119194525|ref|XP_001247866.1| -1 25 25 intron1 Cimm gi|119194525|ref|XP_001247866.1| -1 51 51 intron3 Cimm gi|119194525|ref|XP_001247866.1| -1 93 93 intron3 Cimm gi|119194525|ref|XP_001247866.1| -1 120 120 intron2 Uree gi|258567854|ref|XP_002584671.1| -1 25 25 intron1 Uree gi|258567854|ref|XP_002584671.1| -1 51 51 intron3 Uree gi|258567854|ref|XP_002584671.1| -1 93 93 intron3 Uree gi|258567854|ref|XP_002584671.1| -1 120 120 intron2 Spur gi|115784454|ref|XP_796666.2| -1 12 12 intron2 Spur gi|115784454|ref|XP_796666.2| -1 63 63 intron1 Spur gi|115784454|ref|XP_796666.2| -1 104 104 intron1 Cint gi|198416785|ref|XP_002123832.1| -1 47 47 intron3 Cint gi|198416785|ref|XP_002123832.1| -1 88 88 intron3 CspI gnl|Capca1|18565 -1 11 11 intron1 CspI gnl|Capca1|18565 -1 12 12 intron3 CspI gnl|Capca1|18565 -1 19 19 intron3 CspI gnl|Capca1|18565 -1 50 50 intron3 CspI gnl|Capca1|18565 -1 91 91 intron3 Mbre gi|167519140|ref|XP_001743910.1| -1 6 6 intron1 Mbre gi|167519140|ref|XP_001743910.1| -1 29 29 intron3 Mbre gi|167519140|ref|XP_001743910.1| -1 54 54 intron3 Mbre gi|167519140|ref|XP_001743910.1| -1 78 78 intron3 Mbre gi|167519140|ref|XP_001743910.1| -1 95 95 intron3 Mbre gi|167519140|ref|XP_001743910.1| -1 122 122 intron2 Lgig gnl|Lotgi1|207488 -1 11 11 intron1 Lgig gnl|Lotgi1|207488 -1 56 56 intron3 Lgig gnl|Lotgi1|207488 -1 97 97 intron3 Tadh gi|196003436|ref|XP_002111585.1| -1 8 8 intron1 Tadh gi|196003436|ref|XP_002111585.1| -1 54 54 intron3 Tadh gi|196003436|ref|XP_002111585.1| -1 96 96 intron3 Tadh gi|196003436|ref|XP_002111585.1| -1 123 123 intron2 Cbri gi|268569932|ref|XP_002640652.1| -1 2 2 intron1 Cbri gi|268569932|ref|XP_002640652.1| -1 50 50 intron3 Cbri gi|268569932|ref|XP_002640652.1| -1 92 92 intron3 Cele gi|17508439|ref|NP_493578.1| -1 2 2 intron1 Cele gi|17508439|ref|NP_493578.1| -1 50 50 intron3 Nvec gi|156351460|ref|XP_001622521.1| -1 9 9 intron1 Nvec gi|156351460|ref|XP_001622521.1| -1 54 54 intron3 Nvec gi|156351460|ref|XP_001622521.1| -1 95 95 intron3 Nvec gi|156351460|ref|XP_001622521.1| -1 122 122 intron2 Bflo gi|260805569|ref|XP_002597659.1| -1 6 6 intron1 Bflo gi|260805569|ref|XP_002597659.1| -1 55 55 intron3 Bflo gi|260805569|ref|XP_002597659.1| -1 97 97 intron3 Drer gi|47087259|ref|NP_998680.1| -1 6 6 intron1 Drer gi|47087259|ref|NP_998680.1| -1 55 55 intron3 Drer gi|47087259|ref|NP_998680.1| -1 97 97 intron3 Ggal gi|71896083|ref|NP_001026189.1| -1 6 6 intron1 Ggal gi|71896083|ref|NP_001026189.1| -1 54 54 intron3 Ggal gi|71896083|ref|NP_001026189.1| -1 96 96 intron3 Tgut gi|224046224|ref|XP_002197135.1| -1 6 6 intron1 Tgut gi|224046224|ref|XP_002197135.1| -1 54 54 intron3 Tgut gi|224046224|ref|XP_002197135.1| -1 96 96 intron3 Hsap gi|4507797|ref|NP_003341.1| -1 6 6 intron1 Hsap gi|4507797|ref|NP_003341.1| -1 55 55 intron3 Hsap gi|4507797|ref|NP_003341.1| -1 97 97 intron3 Isca gi|242001738|ref|XP_002435512.1| -1 60 60 intron3 Isca gi|242001738|ref|XP_002435512.1| -1 102 102 intron3 Phum gi|242012271|ref|XP_002426857.1| -1 5 5 intron3 Phum gi|242012271|ref|XP_002426857.1| -1 13 13 intron1 Phum gi|242012271|ref|XP_002426857.1| -1 102 102 intron3 Dmel gi|21355265|ref|NP_647959.1| -1 10 10 intron1 Dmel gi|21355265|ref|NP_647959.1| -1 57 57 intron3 Dmel gi|21355265|ref|NP_647959.1| -1 99 99 intron3 Dmoj gi|195127395|ref|XP_002008154.1| -1 10 10 intron1 Dmoj gi|195127395|ref|XP_002008154.1| -1 57 57 intron3 Dmoj gi|195127395|ref|XP_002008154.1| -1 99 99 intron3 Aaeg gi|157130788|ref|XP_001662012.1| -1 8 8 intron1 Aaeg gi|157130788|ref|XP_001662012.1| -1 55 55 intron3 Aaeg gi|157130788|ref|XP_001662012.1| -1 97 97 intron3 Agam gi|158286583|ref|XP_001688098.1| -1 7 7 intron1 Agam gi|158286583|ref|XP_001688098.1| -1 54 54 intron3 Agam gi|158286583|ref|XP_001688098.1| -1 96 96 intron3 Bmor gnl|Bmor|BGIBMGA011803-PA -1 9 9 intron1 Bmor gnl|Bmor|BGIBMGA011803-PA -1 56 56 intron3 Bmor gnl|Bmor|BGIBMGA011803-PA -1 98 98 intron3 Tcas gi|91092024|ref|XP_966345.1| -1 9 9 intron1 Tcas gi|91092024|ref|XP_966345.1| -1 98 98 intron3 Amel gi|48138568|ref|XP_393411.1| -1 9 9 intron1 Amel gi|48138568|ref|XP_393411.1| -1 56 56 intron3 Amel gi|48138568|ref|XP_393411.1| -1 98 98 intron3 Nvit gi|156546773|ref|XP_001607297.1| -1 9 9 intron1 Nvit gi|156546773|ref|XP_001607297.1| -1 56 56 intron3 Nvit gi|156546773|ref|XP_001607297.1| -1 98 98 intron3