#| ca.umontreal.iro.evolution.introns.WriteIntronTable Tue Apr 12 01:41:00 EDT 2011 #| System: Mac OS X 10.6.7 x86_64 #| Java: Java HotSpot(TM) 64-Bit Server VM 19.1-b02-334 (1.6.0_24-b07-334-10M3326) mixed mode, Apple Inc. #| Current directory: /Users/csuros/Work/introns/larger-data/denovo/census2010/pipeline/3MCMC/HTML #| Arguments: #| Input alignment: alignments/KOG0898.faa #| Intron position list parenthesis: {i .. i} #| Intron positions are relative to: sequence intron1 0,100,200 intron2 0,80,160 intron3 0,50,100 Tthe gi|118365307|ref|XP_001015874.1| -1 91 91 intron1 Ptet gi|145481033|ref|XP_001426539.1| -1 62 62 intron3 Ptet gi|145481033|ref|XP_001426539.1| -1 117 117 intron2 Ehux gnl|Emihu1|310388 -1 1 1 intron3 Ehux gnl|Emihu1|310388 -1 99 99 intron3 O809 gnl|OstRCC809_2|64845 -1 1 1 intron3 Otau gnl|Ostta4|29259 -1 1 1 intron3 M299 gi|255071029|ref|XP_002507596.1| -1 1 1 intron3 Mpus gnl|MicpuC2|30685 -1 1 1 intron3 Pfal gi|124513116|ref|XP_001349914.1| -1 3 3 intron3 Pviv gi|156102825|ref|XP_001617105.1| -1 1 1 intron3 Pyoe gi|83282342|ref|XP_729727.1| -1 7 7 intron3 Umay gi|71021099|ref|XP_760780.1| -1 29 29 intron2 Cneo gi|134112782|ref|XP_774934.1| -1 1 1 intron3 Cneo gi|134112782|ref|XP_774934.1| -1 42 42 intron3 Cneo gi|134112782|ref|XP_774934.1| -1 104 104 intron3 Cneo gi|134112782|ref|XP_774934.1| -1 146 146 intron2 Tann gi|84996041|ref|XP_952742.1| -1 10 10 intron3 Tann gi|84996041|ref|XP_952742.1| -1 53 53 intron1 Tpar gi|71028084|ref|XP_763685.1| -1 1 1 intron3 Tpar gi|71028084|ref|XP_763685.1| -1 51 51 intron1 Ddis gi|66808807|ref|XP_638126.1| -1 3 3 intron2 Ddis gi|66808807|ref|XP_638126.1| -1 139 139 intron2 Dpur gnl|Dicpu1|50299 -1 3 3 intron2 Dpur gnl|Dicpu1|50299 -1 17 17 intron3 Tgon gi|237843553|ref|XP_002371074.1| -1 1 1 intron3 Tgon gi|237843553|ref|XP_002371074.1| -1 113 113 intron3 Cbri gi|268566199|ref|XP_002639660.1| -1 36 36 intron2 Cbri gi|268566199|ref|XP_002639660.1| -1 110 110 intron3 Cele gi|17508693|ref|NP_492384.1| -1 36 36 intron2 Cele gi|17508693|ref|NP_492384.1| -1 110 110 intron3 Cowc gnl|Cowc1|CAOG_01757T0 -1 1 1 intron3 Bbov gi|156085092|ref|XP_001610029.1| -1 1 1 intron3 Bbov gi|156085092|ref|XP_001610029.1| -1 50 50 intron1 Pcap gnl|PhycaF7|96843 -1 118 118 intron3 Pram gnl|Phyra1_1|71479 -1 118 118 intron3 Psoj gnl|Physo1_1|109596 -1 118 118 intron3 Prsp gnl|Prsp1|PTSG_01154T0 -1 33 33 intron1 Prsp gnl|Prsp1|PTSG_01154T0 -1 64 64 intron3 Prsp gnl|Prsp1|PTSG_01154T0 -1 83 83 intron3 Prsp gnl|Prsp1|PTSG_01154T0 -1 115 115 intron3 Prsp gnl|Prsp1|PTSG_01154T0 -1 146 146 intron2 Prsp gnl|Prsp1|PTSG_01154T0 -1 169 169 intron3 Prsp gnl|Prsp1|PTSG_01154T0 -1 209 209 intron3 Prsp gnl|Prsp1|PTSG_01154T0 -1 233 233 intron1 Prsp gnl|Prsp1|PTSG_01154T0 -1 279 279 intron3 Prsp gnl|Prsp1|PTSG_01154T0 -1 300 300 intron3 Prsp gnl|Prsp1|PTSG_01154T0 -1 309 309 intron3 Prsp gnl|Prsp1|PTSG_01154T0 -1 340 340 intron3 Prsp gnl|Prsp1|PTSG_01154T0 -1 378 378 intron3 Prsp gnl|Prsp1|PTSG_01154T0 -1 416 416 intron3 C64A gnl|ChlNC64A_1|48682 -1 17 17 intron3 C64A gnl|ChlNC64A_1|48682 -1 43 43 intron2 C64A gnl|ChlNC64A_1|48682 -1 74 74 intron3 C64A gnl|ChlNC64A_1|48682 -1 103 103 intron3 C169 gnl|Coc_C169_1|31273 -1 124 124 intron2 C169 gnl|Coc_C169_1|31273 -1 184 184 intron3 Bmal gi|170592703|ref|XP_001901104.1| -1 45 45 intron2 Bmal gi|170592703|ref|XP_001901104.1| -1 119 119 intron3 Pbla gnl|Phybl1|75637 -1 5 5 intron3 Pbla gnl|Phybl1|75637 -1 20 20 intron3 Sman gi|256073492|ref|XP_002573064.1| -1 1 1 intron3 Sman gi|256073492|ref|XP_002573064.1| -1 30 30 intron2 Sman gi|256073492|ref|XP_002573064.1| -1 74 74 intron3 Apis gi|187113156|ref|NP_001119679.1| -1 5 5 intron3 Apis gi|187113156|ref|NP_001119679.1| -1 34 34 intron2 Apis gi|187113156|ref|NP_001119679.1| -1 113 113 intron3 Hmag gi|221130427|ref|XP_002155170.1| -1 1 1 intron3 Hmag gi|221130427|ref|XP_002155170.1| -1 110 110 intron3 Lgig gnl|Lotgi1|149778 -1 2 2 intron3 Lgig gnl|Lotgi1|149778 -1 37 37 intron2 Lgig gnl|Lotgi1|149778 -1 81 81 intron3 Lgig gnl|Lotgi1|149778 -1 115 115 intron3 Spur gi|115911602|ref|XP_780510.2| -1 2 2 intron3 Spur gi|115911602|ref|XP_780510.2| -1 20 20 intron3 Spur gi|115911602|ref|XP_780510.2| -1 49 49 intron2 Spur gi|115911602|ref|XP_780510.2| -1 127 127 intron3 Dpul gnl|Dappu1|129273 -1 55 55 intron3 Anid gi|67539654|ref|XP_663601.1| -1 37 37 intron1 Anid gi|67539654|ref|XP_663601.1| -1 155 155 intron2 Prep gi|189203667|ref|XP_001938169.1| -1 13 13 intron1 Prep gi|189203667|ref|XP_001938169.1| -1 32 32 intron2 Prep gi|189203667|ref|XP_001938169.1| -1 73 73 intron1 Pnod gi|169603435|ref|XP_001795139.1| -1 6 6 intron2 Pnod gi|169603435|ref|XP_001795139.1| -1 30 30 intron2 Gzea gi|46105805|ref|XP_380571.1| -1 5 5 intron3 Gzea gi|46105805|ref|XP_380571.1| -1 31 31 intron2 Gzea gi|46105805|ref|XP_380571.1| -1 130 130 intron2 Bfuc gi|154308974|ref|XP_001553822.1| -1 6 6 intron3 Bfuc gi|154308974|ref|XP_001553822.1| -1 32 32 intron2 Bfuc gi|154308974|ref|XP_001553822.1| -1 131 131 intron2 Sscl gi|156063164|ref|XP_001597504.1| -1 6 6 intron3 Sscl gi|156063164|ref|XP_001597504.1| -1 32 32 intron2 Sscl gi|156063164|ref|XP_001597504.1| -1 131 131 intron2 Cimm gi|119195697|ref|XP_001248452.1| -1 6 6 intron3 Cimm gi|119195697|ref|XP_001248452.1| -1 13 13 intron1 Cimm gi|119195697|ref|XP_001248452.1| -1 32 32 intron2 Cimm gi|119195697|ref|XP_001248452.1| -1 131 131 intron2 Uree gi|258575595|ref|XP_002541979.1| -1 6 6 intron3 Uree gi|258575595|ref|XP_002541979.1| -1 13 13 intron1 Uree gi|258575595|ref|XP_002541979.1| -1 32 32 intron2 Uree gi|258575595|ref|XP_002541979.1| -1 131 131 intron2 Mfij gnl|Mycfi1|53857 -1 6 6 intron3 Mfij gnl|Mycfi1|53857 -1 13 13 intron1 Mfij gnl|Mycfi1|53857 -1 32 32 intron2 Mfij gnl|Mycfi1|53857 -1 131 131 intron2 Mgra gnl|Mycgr3|31968 -1 22 22 intron2 Mgra gnl|Mycgr3|31968 -1 121 121 intron2 Ncra gi|85117036|ref|XP_965164.1| -1 5 5 intron3 Ncra gi|85117036|ref|XP_965164.1| -1 31 31 intron2 Ncra gi|85117036|ref|XP_965164.1| -1 130 130 intron2 Mgri gi|145614766|ref|XP_366150.2| -1 6 6 intron3 Mgri gi|145614766|ref|XP_366150.2| -1 32 32 intron2 Mgri gi|145614766|ref|XP_366150.2| -1 131 131 intron2 Mlar gnl|Mellp1|89115 -1 11 11 intron3 Mlar gnl|Mellp1|89115 -1 104 104 intron3 Mlar gnl|Mellp1|89115 -1 135 135 intron1 Abis gnl|Agabi_varbisH97_2|143693 -1 1 1 intron3 Abis gnl|Agabi_varbisH97_2|143693 -1 39 39 intron3 Abis gnl|Agabi_varbisH97_2|143693 -1 104 104 intron3 Abis gnl|Agabi_varbisH97_2|143693 -1 136 136 intron3 Ccin gi|169849744|ref|XP_001831571.1| -1 1 1 intron3 Ccin gi|169849744|ref|XP_001831571.1| -1 39 39 intron3 Ccin gi|169849744|ref|XP_001831571.1| -1 42 42 intron3 Ccin gi|169849744|ref|XP_001831571.1| -1 139 139 intron3 Ccin gi|169849744|ref|XP_001831571.1| -1 145 145 intron1 Lbic gnl|Lacbi1|305539 -1 1 1 intron3 Lbic gnl|Lacbi1|305539 -1 39 39 intron3 Lbic gnl|Lacbi1|305539 -1 42 42 intron3 Lbic gnl|Lacbi1|305539 -1 107 107 intron3 Lbic gnl|Lacbi1|305539 -1 139 139 intron3 Lbic gnl|Lacbi1|305539 -1 145 145 intron1 Lbic gnl|Lacbi1|305539 -1 148 148 intron2 Fchr gnl|Phchr1|127231 -1 30 30 intron3 Fchr gnl|Phchr1|127231 -1 95 95 intron3 Fchr gnl|Phchr1|127231 -1 133 133 intron1 Fchr gnl|Phchr1|127231 -1 140 140 intron3 Tadh gi|196002433|ref|XP_002111084.1| -1 1 1 intron3 Tadh gi|196002433|ref|XP_002111084.1| -1 108 108 intron3 Sros gnl|Sporo1|23289 -1 25 25 intron3 Sros gnl|Sporo1|23289 -1 107 107 intron1 Sros gnl|Sporo1|23289 -1 145 145 intron3 Dmoj gi|195122114|ref|XP_002005557.1| -1 3 3 intron3 Dmoj gi|195122114|ref|XP_002005557.1| -1 33 33 intron2 Dmoj gi|195122114|ref|XP_002005557.1| -1 107 107 intron3 Dmel gi|19922390|ref|NP_611136.1| -1 3 3 intron3 Dmel gi|19922390|ref|NP_611136.1| -1 33 33 intron2 Dmel gi|19922390|ref|NP_611136.1| -1 107 107 intron3 Tcas gi|91077212|ref|XP_973139.1| -1 4 4 intron3 Tcas gi|91077212|ref|XP_973139.1| -1 33 33 intron2 Mcir gnl|Mucci2|157505 -1 6 6 intron3 Mcir gnl|Mucci2|157505 -1 38 38 intron3 Osat gi|115455943|ref|NP_001051572.1| -1 1 1 intron3 Osat gi|115455943|ref|NP_001051572.1| -1 53 53 intron2 Osat gi|115455943|ref|NP_001051572.1| -1 72 72 intron3 Sbic gi|242088427|ref|XP_002440046.1| -1 1 1 intron3 Sbic gi|242088427|ref|XP_002440046.1| -1 53 53 intron2 Sbic gi|242088427|ref|XP_002440046.1| -1 72 72 intron3 Amac lcl|AMAG_16655T0 -1 1 1 intron3 Cint gi|198414776|ref|XP_002127310.1| -1 1 1 intron3 Cint gi|198414776|ref|XP_002127310.1| -1 29 29 intron2 Cint gi|198414776|ref|XP_002127310.1| -1 61 61 intron3 Cint gi|198414776|ref|XP_002127310.1| -1 107 107 intron3 Mbre gi|167518616|ref|XP_001743648.1| -1 31 31 intron3 Mbre gi|167518616|ref|XP_001743648.1| -1 69 69 intron3 Mbre gi|167518616|ref|XP_001743648.1| -1 107 107 intron3 Rory lcl|RO3G_02305 -1 1 1 intron3 Rory lcl|RO3G_02305 -1 33 33 intron3 Isca gi|241029422|ref|XP_002406430.1| -1 3 3 intron3 Isca gi|241029422|ref|XP_002406430.1| -1 34 34 intron2 Isca gi|241029422|ref|XP_002406430.1| -1 112 112 intron3 Smoe gnl|Selmo1|172403 -1 51 51 intron2 Smoe gnl|Selmo1|172403 -1 70 70 intron3 Smoe gnl|Selmo1|172403 -1 115 115 intron3 Nvec gi|156397301|ref|XP_001637830.1| -1 1 1 intron3 Nvec gi|156397301|ref|XP_001637830.1| -1 112 112 intron3 Phum gi|242016286|ref|XP_002428760.1| -1 3 3 intron3 Phum gi|242016286|ref|XP_002428760.1| -1 32 32 intron2 Phum gi|242016286|ref|XP_002428760.1| -1 110 110 intron3 Spun lcl|SPPG_04127T0 -1 1 1 intron3 Spun lcl|SPPG_04127T0 -1 39 39 intron3 Spun lcl|SPPG_04127T0 -1 147 147 intron2 Bflo gi|260800197|ref|XP_002595021.1| -1 1 1 intron3 Bflo gi|260800197|ref|XP_002595021.1| -1 34 34 intron2 Bflo gi|260800197|ref|XP_002595021.1| -1 112 112 intron3 Drer gi|49227325|ref|NP_001001819.1| -1 1 1 intron3 Drer gi|49227325|ref|NP_001001819.1| -1 30 30 intron2 Drer gi|49227325|ref|NP_001001819.1| -1 108 108 intron3 Ggal gi|45382615|ref|NP_990793.1| -1 1 1 intron3 Ggal gi|45382615|ref|NP_990793.1| -1 30 30 intron2 Ggal gi|45382615|ref|NP_990793.1| -1 108 108 intron3 Tgut gi|224087809|ref|XP_002198363.1| -1 1 1 intron3 Tgut gi|224087809|ref|XP_002198363.1| -1 30 30 intron2 Tgut gi|224087809|ref|XP_002198363.1| -1 108 108 intron3 Hsap gi|4506687|ref|NP_001009.1| -1 1 1 intron3 Hsap gi|4506687|ref|NP_001009.1| -1 30 30 intron2 Hsap gi|4506687|ref|NP_001009.1| -1 108 108 intron3 Bmor gnl|Bmor|BGIBMGA001471-PA -1 3 3 intron3 Bmor gnl|Bmor|BGIBMGA001471-PA -1 32 32 intron2 Bmor gnl|Bmor|BGIBMGA001471-PA -1 106 106 intron3 Amel gi|110757985|ref|XP_624038.2| -1 3 3 intron3 Amel gi|110757985|ref|XP_624038.2| -1 32 32 intron2 Nvit gi|156546898|ref|XP_001599736.1| -1 3 3 intron3 Nvit gi|156546898|ref|XP_001599736.1| -1 32 32 intron2 CspI gnl|Capca1|162084 -1 1 1 intron3 CspI gnl|Capca1|162084 -1 36 36 intron2 CspI gnl|Capca1|162084 -1 80 80 intron3 CspI gnl|Capca1|162084 -1 114 114 intron3 Hrob gnl|Helro1|85972 -1 26 26 intron3