#| ca.umontreal.iro.evolution.introns.WriteIntronTable Tue Apr 12 01:41:01 EDT 2011 #| System: Mac OS X 10.6.7 x86_64 #| Java: Java HotSpot(TM) 64-Bit Server VM 19.1-b02-334 (1.6.0_24-b07-334-10M3326) mixed mode, Apple Inc. #| Current directory: /Users/csuros/Work/introns/larger-data/denovo/census2010/pipeline/3MCMC/HTML #| Arguments: #| Input alignment: alignments/KOG1036.faa #| Intron position list parenthesis: {i .. i} #| Intron positions are relative to: sequence intron1 0,100,200 intron2 0,80,160 intron3 0,50,100 Umay gi|71019937|ref|XP_760199.1| -1 321 321 intron2 Spom gi|19114710|ref|NP_593798.1| -1 108 108 intron1 Cneo gi|58267662|ref|XP_570987.1| -1 84 84 intron2 Cneo gi|58267662|ref|XP_570987.1| -1 114 114 intron2 Cneo gi|58267662|ref|XP_570987.1| -1 142 142 intron1 Cneo gi|58267662|ref|XP_570987.1| -1 158 158 intron2 Cneo gi|58267662|ref|XP_570987.1| -1 235 235 intron1 Cneo gi|58267662|ref|XP_570987.1| -1 285 285 intron2 Cneo gi|58267662|ref|XP_570987.1| -1 353 353 intron3 Otau gnl|Ostta4|36254 -1 25 25 intron1 Otau gnl|Ostta4|36254 -1 53 53 intron1 Otau gnl|Ostta4|36254 -1 91 91 intron1 Oluc gi|145357414|ref|XP_001422914.1| -1 149 149 intron2 O809 gnl|OstRCC809_2|23840 -1 141 141 intron2 Tpse gi|223996907|ref|XP_002288127.1| -1 49 49 intron2 Tpse gi|223996907|ref|XP_002288127.1| -1 189 189 intron1 Tpse gi|223996907|ref|XP_002288127.1| -1 230 230 intron1 Ftri gi|219112033|ref|XP_002177768.1| -1 329 329 intron1 Cbri gi|268532804|ref|XP_002631530.1| -1 29 29 intron3 Cbri gi|268532804|ref|XP_002631530.1| -1 78 78 intron3 Cbri gi|268532804|ref|XP_002631530.1| -1 290 290 intron2 Cele gi|17537541|ref|NP_496879.1| -1 78 78 intron3 Cele gi|17537541|ref|NP_496879.1| -1 291 291 intron2 Sros gnl|Sporo1|15726 -1 76 76 intron1 Sros gnl|Sporo1|15726 -1 176 176 intron1 Sros gnl|Sporo1|15726 -1 228 228 intron2 Mgri gi|39975925|ref|XP_369353.1| -1 82 82 intron2 Mgri gi|39975925|ref|XP_369353.1| -1 110 110 intron1 Ncra gi|85112981|ref|XP_964446.1| -1 4 4 intron1 Ncra gi|85112981|ref|XP_964446.1| -1 86 86 intron2 Ncra gi|85112981|ref|XP_964446.1| -1 114 114 intron1 Anid gi|67523967|ref|XP_660043.1| -1 71 71 intron2 Cimm gi|119175792|ref|XP_001240063.1| -1 13 13 intron2 Cimm gi|119175792|ref|XP_001240063.1| -1 21 21 intron1 Cimm gi|119175792|ref|XP_001240063.1| -1 77 77 intron2 Chet gnl|CocheC5_1|81328 -1 3 3 intron1 Prep gi|189206079|ref|XP_001939374.1| -1 3 3 intron1 Gzea gi|46123683|ref|XP_386395.1| -1 4 4 intron1 Gzea gi|46123683|ref|XP_386395.1| -1 86 86 intron2 Gzea gi|46123683|ref|XP_386395.1| -1 114 114 intron1 Bfuc gi|154303575|ref|XP_001552194.1| -1 4 4 intron1 Sscl gi|156049605|ref|XP_001590769.1| -1 4 4 intron1 Sscl gi|156049605|ref|XP_001590769.1| -1 86 86 intron2 Sscl gi|156049605|ref|XP_001590769.1| -1 114 114 intron1 Ccin gi|169850649|ref|XP_001832018.1| -1 41 41 intron3 Ccin gi|169850649|ref|XP_001832018.1| -1 97 97 intron2 Ccin gi|169850649|ref|XP_001832018.1| -1 228 228 intron1 Ccin gi|169850649|ref|XP_001832018.1| -1 290 290 intron2 Ccin gi|169850649|ref|XP_001832018.1| -1 339 339 intron1 Lbic gnl|Lacbi1|178406 -1 2 2 intron1 Lbic gnl|Lacbi1|178406 -1 37 37 intron3 Lbic gnl|Lacbi1|178406 -1 86 86 intron2 Lbic gnl|Lacbi1|178406 -1 114 114 intron1 Lbic gnl|Lacbi1|178406 -1 199 199 intron1 Lbic gnl|Lacbi1|178406 -1 251 251 intron2 Lbic gnl|Lacbi1|178406 -1 330 330 intron2 Pgra lcl|PGTG_17391 -1 8 8 intron1 Pgra lcl|PGTG_17391 -1 248 248 intron1 Pgra lcl|PGTG_17391 -1 300 300 intron2 Pgra lcl|PGTG_17391 -1 411 411 intron3 Mlar gnl|Mellp1|32755 -1 196 196 intron1 Mlar gnl|Mellp1|32755 -1 216 216 intron1 Mlar gnl|Mellp1|32755 -1 268 268 intron2 Pram gnl|Phyra1_1|44460 -1 298 298 intron2 Psoj gnl|Physo1_1|132132 -1 319 319 intron2 Amac lcl|AMAG_11279T0 -1 44 44 intron3 Amac lcl|AMAG_11279T0 -1 107 107 intron1 Amac lcl|AMAG_11279T0 -1 159 159 intron2 Amac lcl|AMAG_11279T0 -1 220 220 intron2 Ddis gi|66802115|ref|XP_629851.1| -1 39 39 intron3 Ddis gi|66802115|ref|XP_629851.1| -1 310 310 intron2 Dpur gnl|Dicpu1|39021 -1 38 38 intron3 Dpur gnl|Dicpu1|39021 -1 309 309 intron2 Ehux gnl|Emihu1|74365 -1 171 171 intron2 Ehux gnl|Emihu1|74365 -1 206 206 intron1 Rory lcl|RO3G_07347 -1 37 37 intron3 Rory lcl|RO3G_07347 -1 81 81 intron2 Rory lcl|RO3G_07347 -1 109 109 intron1 Rory lcl|RO3G_07347 -1 201 201 intron2 Mbre gi|167521549|ref|XP_001745113.1| -1 33 33 intron3 Mbre gi|167521549|ref|XP_001745113.1| -1 68 68 intron2 Mbre gi|167521549|ref|XP_001745113.1| -1 108 108 intron1 Mbre gi|167521549|ref|XP_001745113.1| -1 138 138 intron3 Mbre gi|167521549|ref|XP_001745113.1| -1 192 192 intron1 Mbre gi|167521549|ref|XP_001745113.1| -1 243 243 intron2 Mbre gi|167521549|ref|XP_001745113.1| -1 303 303 intron2 Bden lcl|BDEG_00071 -1 40 40 intron3 Bden lcl|BDEG_00071 -1 85 85 intron2 Bden lcl|BDEG_00071 -1 113 113 intron1 Bden lcl|BDEG_00071 -1 250 250 intron2 Bden lcl|BDEG_00071 -1 310 310 intron2 Spun lcl|SPPG_08280T0 -1 41 41 intron3 Spun lcl|SPPG_08280T0 -1 85 85 intron2 Spun lcl|SPPG_08280T0 -1 113 113 intron1 Spun lcl|SPPG_08280T0 -1 197 197 intron1 Spun lcl|SPPG_08280T0 -1 247 247 intron2 Spun lcl|SPPG_08280T0 -1 307 307 intron2 Crei gi|159481175|ref|XP_001698657.1| -1 42 42 intron3 Crei gi|159481175|ref|XP_001698657.1| -1 86 86 intron2 Crei gi|159481175|ref|XP_001698657.1| -1 114 114 intron1 Crei gi|159481175|ref|XP_001698657.1| -1 174 174 intron2 Crei gi|159481175|ref|XP_001698657.1| -1 204 204 intron1 Crei gi|159481175|ref|XP_001698657.1| -1 228 228 intron3 Crei gi|159481175|ref|XP_001698657.1| -1 258 258 intron1 Crei gi|159481175|ref|XP_001698657.1| -1 314 314 intron3 Vcar gnl|Volca1|102432 -1 39 39 intron3 Vcar gnl|Volca1|102432 -1 83 83 intron2 Vcar gnl|Volca1|102432 -1 111 111 intron1 Vcar gnl|Volca1|102432 -1 171 171 intron2 Vcar gnl|Volca1|102432 -1 225 225 intron3 Vcar gnl|Volca1|102432 -1 255 255 intron1 C64A gnl|ChlNC64A_1|33942 -1 35 35 intron3 C64A gnl|ChlNC64A_1|33942 -1 79 79 intron2 C64A gnl|ChlNC64A_1|33942 -1 116 116 intron2 C64A gnl|ChlNC64A_1|33942 -1 167 167 intron2 C64A gnl|ChlNC64A_1|33942 -1 218 218 intron3 C64A gnl|ChlNC64A_1|33942 -1 274 274 intron1 C64A gnl|ChlNC64A_1|33942 -1 322 322 intron3 C169 gnl|Coc_C169_1|14755 -1 39 39 intron3 C169 gnl|Coc_C169_1|14755 -1 83 83 intron2 C169 gnl|Coc_C169_1|14755 -1 131 131 intron3 C169 gnl|Coc_C169_1|14755 -1 171 171 intron2 C169 gnl|Coc_C169_1|14755 -1 260 260 intron1 Osat gi|115453741|ref|NP_001050471.1| -1 44 44 intron3 Osat gi|115453741|ref|NP_001050471.1| -1 88 88 intron2 Osat gi|115453741|ref|NP_001050471.1| -1 116 116 intron1 Osat gi|115453741|ref|NP_001050471.1| -1 205 205 intron1 Osat gi|115453741|ref|NP_001050471.1| -1 230 230 intron2 Osat gi|115453741|ref|NP_001050471.1| -1 257 257 intron2 Osat gi|115453741|ref|NP_001050471.1| -1 283 283 intron3 Osat gi|115453741|ref|NP_001050471.1| -1 317 317 intron2 Sbic gi|242091924|ref|XP_002436452.1| -1 43 43 intron3 Sbic gi|242091924|ref|XP_002436452.1| -1 87 87 intron2 Sbic gi|242091924|ref|XP_002436452.1| -1 115 115 intron1 Sbic gi|242091924|ref|XP_002436452.1| -1 204 204 intron1 Sbic gi|242091924|ref|XP_002436452.1| -1 229 229 intron2 Sbic gi|242091924|ref|XP_002436452.1| -1 256 256 intron2 Sbic gi|242091924|ref|XP_002436452.1| -1 282 282 intron3 Sbic gi|242091924|ref|XP_002436452.1| -1 316 316 intron2 Atha gi|15222841|ref|NP_175413.1| -1 38 38 intron3 Atha gi|15222841|ref|NP_175413.1| -1 82 82 intron2 Atha gi|15222841|ref|NP_175413.1| -1 110 110 intron1 Atha gi|15222841|ref|NP_175413.1| -1 199 199 intron1 Atha gi|15222841|ref|NP_175413.1| -1 224 224 intron2 Atha gi|15222841|ref|NP_175413.1| -1 251 251 intron2 Atha gi|15222841|ref|NP_175413.1| -1 277 277 intron3 Atha gi|15222841|ref|NP_175413.1| -1 311 311 intron2 Vvin gi|225428975|ref|XP_002264472.1| -1 40 40 intron3 Vvin gi|225428975|ref|XP_002264472.1| -1 84 84 intron2 Vvin gi|225428975|ref|XP_002264472.1| -1 112 112 intron1 Vvin gi|225428975|ref|XP_002264472.1| -1 201 201 intron1 Vvin gi|225428975|ref|XP_002264472.1| -1 226 226 intron2 Vvin gi|225428975|ref|XP_002264472.1| -1 253 253 intron2 Vvin gi|225428975|ref|XP_002264472.1| -1 279 279 intron3 Vvin gi|225428975|ref|XP_002264472.1| -1 313 313 intron2 Smoe gnl|Selmo1|146851 -1 40 40 intron3 Smoe gnl|Selmo1|146851 -1 84 84 intron2 Smoe gnl|Selmo1|146851 -1 112 112 intron1 Smoe gnl|Selmo1|146851 -1 199 199 intron1 Smoe gnl|Selmo1|146851 -1 224 224 intron2 Smoe gnl|Selmo1|146851 -1 251 251 intron2 Smoe gnl|Selmo1|146851 -1 277 277 intron3 Smoe gnl|Selmo1|146851 -1 311 311 intron2 Ppat gi|168024384|ref|XP_001764716.1| -1 10 10 intron1 Ppat gi|168024384|ref|XP_001764716.1| -1 86 86 intron2 Ppat gi|168024384|ref|XP_001764716.1| -1 114 114 intron1 Ppat gi|168024384|ref|XP_001764716.1| -1 200 200 intron1 Ppat gi|168024384|ref|XP_001764716.1| -1 225 225 intron2 Ppat gi|168024384|ref|XP_001764716.1| -1 252 252 intron2 Ppat gi|168024384|ref|XP_001764716.1| -1 278 278 intron3 Ppat gi|168024384|ref|XP_001764716.1| -1 312 312 intron2 Cowc lcl|CAOG_02326T0 -1 40 40 intron3 Cowc lcl|CAOG_02326T0 -1 85 85 intron2 Cowc lcl|CAOG_02326T0 -1 198 198 intron1 Cowc lcl|CAOG_02326T0 -1 250 250 intron2 Cowc lcl|CAOG_02326T0 -1 310 310 intron2 Sman gi|256079106|ref|XP_002575831.1| -1 95 95 intron1 Sman gi|256079106|ref|XP_002575831.1| -1 218 218 intron1 Sman gi|256079106|ref|XP_002575831.1| -1 269 269 intron1 Prsp gnl|Prsp1|PTSG_08955T0 -1 33 33 intron3 Prsp gnl|Prsp1|PTSG_08955T0 -1 68 68 intron2 Prsp gnl|Prsp1|PTSG_08955T0 -1 135 135 intron3 Prsp gnl|Prsp1|PTSG_08955T0 -1 150 150 intron3 Prsp gnl|Prsp1|PTSG_08955T0 -1 163 163 intron3 Prsp gnl|Prsp1|PTSG_08955T0 -1 189 189 intron1 Prsp gnl|Prsp1|PTSG_08955T0 -1 241 241 intron2 Prsp gnl|Prsp1|PTSG_08955T0 -1 267 267 intron3 Prsp gnl|Prsp1|PTSG_08955T0 -1 301 301 intron2 Dmel gi|17137584|ref|NP_477381.1| -1 64 64 intron3 Dmoj gi|195108535|ref|XP_001998848.1| -1 64 64 intron3 Aaeg gi|157116134|ref|XP_001658374.1| -1 65 65 intron3 Agam gi|158293177|ref|XP_314512.3| -1 69 69 intron3 Dpul gnl|Dappu1|310020 -1 16 16 intron2 Dpul gnl|Dappu1|310020 -1 65 65 intron3 Dpul gnl|Dappu1|310020 -1 89 89 intron1 Dpul gnl|Dappu1|310020 -1 116 116 intron2 Dpul gnl|Dappu1|310020 -1 201 201 intron1 Dpul gnl|Dappu1|310020 -1 241 241 intron2 Dpul gnl|Dappu1|310020 -1 261 261 intron3 Dpul gnl|Dappu1|310020 -1 318 318 intron3 Tadh gi|195999014|ref|XP_002109375.1| -1 38 38 intron3 Tadh gi|195999014|ref|XP_002109375.1| -1 82 82 intron2 Tadh gi|195999014|ref|XP_002109375.1| -1 110 110 intron1 Tadh gi|195999014|ref|XP_002109375.1| -1 140 140 intron3 Tadh gi|195999014|ref|XP_002109375.1| -1 155 155 intron3 Tadh gi|195999014|ref|XP_002109375.1| -1 168 168 intron3 Tadh gi|195999014|ref|XP_002109375.1| -1 194 194 intron1 Tadh gi|195999014|ref|XP_002109375.1| -1 246 246 intron2 Tadh gi|195999014|ref|XP_002109375.1| -1 272 272 intron3 Tadh gi|195999014|ref|XP_002109375.1| -1 306 306 intron2 Phum gi|242021567|ref|XP_002431216.1| -1 68 68 intron3 Phum gi|242021567|ref|XP_002431216.1| -1 118 118 intron1 Phum gi|242021567|ref|XP_002431216.1| -1 302 302 intron1 Hmag gi|221124187|ref|XP_002154916.1| -1 40 40 intron3 Hmag gi|221124187|ref|XP_002154916.1| -1 84 84 intron2 Hmag gi|221124187|ref|XP_002154916.1| -1 112 112 intron1 Hmag gi|221124187|ref|XP_002154916.1| -1 142 142 intron3 Hmag gi|221124187|ref|XP_002154916.1| -1 157 157 intron3 Hmag gi|221124187|ref|XP_002154916.1| -1 170 170 intron3 Hmag gi|221124187|ref|XP_002154916.1| -1 196 196 intron1 Hmag gi|221124187|ref|XP_002154916.1| -1 248 248 intron2 Isca gi|241083153|ref|XP_002409045.1| -1 6 6 intron1 Isca gi|241083153|ref|XP_002409045.1| -1 58 58 intron1 Isca gi|241083153|ref|XP_002409045.1| -1 59 59 intron2 Isca gi|241083153|ref|XP_002409045.1| -1 78 78 intron3 Isca gi|241083153|ref|XP_002409045.1| -1 152 152 intron3 Isca gi|241083153|ref|XP_002409045.1| -1 214 214 intron1 Hrob gnl|Helro1|156412 -1 62 62 intron3 Hrob gnl|Helro1|156412 -1 64 64 intron1 Hrob gnl|Helro1|156412 -1 114 114 intron3 Hrob gnl|Helro1|156412 -1 176 176 intron1 Hrob gnl|Helro1|156412 -1 248 248 intron2 Cint gi|198420371|ref|XP_002129118.1| -1 63 63 intron3 Cint gi|198420371|ref|XP_002129118.1| -1 98 98 intron2 Cint gi|198420371|ref|XP_002129118.1| -1 137 137 intron3 Cint gi|198420371|ref|XP_002129118.1| -1 190 190 intron3 Cint gi|198420371|ref|XP_002129118.1| -1 250 250 intron1 Cint gi|198420371|ref|XP_002129118.1| -1 324 324 intron2 Nvec gi|156390723|ref|XP_001635419.1| -1 39 39 intron3 Nvec gi|156390723|ref|XP_001635419.1| -1 83 83 intron2 Nvec gi|156390723|ref|XP_001635419.1| -1 111 111 intron1 Nvec gi|156390723|ref|XP_001635419.1| -1 141 141 intron3 Nvec gi|156390723|ref|XP_001635419.1| -1 156 156 intron3 Nvec gi|156390723|ref|XP_001635419.1| -1 169 169 intron3 Nvec gi|156390723|ref|XP_001635419.1| -1 195 195 intron1 Nvec gi|156390723|ref|XP_001635419.1| -1 247 247 intron2 Nvec gi|156390723|ref|XP_001635419.1| -1 273 273 intron3 Nvec gi|156390723|ref|XP_001635419.1| -1 307 307 intron2 Lgig gnl|Lotgi1|223691 -1 66 66 intron3 Lgig gnl|Lotgi1|223691 -1 90 90 intron1 Lgig gnl|Lotgi1|223691 -1 140 140 intron3 Lgig gnl|Lotgi1|223691 -1 202 202 intron1 Lgig gnl|Lotgi1|223691 -1 275 275 intron2 CspI gnl|Capca1|21337 -1 92 92 intron1 CspI gnl|Capca1|21337 -1 204 204 intron1 CspI gnl|Capca1|21337 -1 277 277 intron2 Spur gi|72015359|ref|XP_780636.1| -1 66 66 intron3 Spur gi|72015359|ref|XP_780636.1| -1 90 90 intron1 Spur gi|72015359|ref|XP_780636.1| -1 140 140 intron3 Spur gi|72015359|ref|XP_780636.1| -1 228 228 intron3 Spur gi|72015359|ref|XP_780636.1| -1 286 286 intron2 Bflo gi|260826716|ref|XP_002608311.1| -1 69 69 intron3 Bflo gi|260826716|ref|XP_002608311.1| -1 93 93 intron1 Bflo gi|260826716|ref|XP_002608311.1| -1 143 143 intron3 Bflo gi|260826716|ref|XP_002608311.1| -1 204 204 intron2 Bflo gi|260826716|ref|XP_002608311.1| -1 256 256 intron1 Bflo gi|260826716|ref|XP_002608311.1| -1 328 328 intron2 Hsap gi|56550081|ref|NP_001007794.1| -1 65 65 intron3 Hsap gi|56550081|ref|NP_001007794.1| -1 89 89 intron1 Hsap gi|56550081|ref|NP_001007794.1| -1 139 139 intron3 Hsap gi|56550081|ref|NP_001007794.1| -1 192 192 intron3 Hsap gi|56550081|ref|NP_001007794.1| -1 252 252 intron1 Hsap gi|56550081|ref|NP_001007794.1| -1 324 324 intron2 Ggal gi|57529813|ref|NP_001006506.1| -1 3 3 intron3 Ggal gi|57529813|ref|NP_001006506.1| -1 68 68 intron3 Ggal gi|57529813|ref|NP_001006506.1| -1 92 92 intron1 Ggal gi|57529813|ref|NP_001006506.1| -1 142 142 intron3 Ggal gi|57529813|ref|NP_001006506.1| -1 195 195 intron3 Ggal gi|57529813|ref|NP_001006506.1| -1 255 255 intron1 Ggal gi|57529813|ref|NP_001006506.1| -1 327 327 intron2 Tgut gi|224053141|ref|XP_002192609.1| -1 3 3 intron3 Tgut gi|224053141|ref|XP_002192609.1| -1 68 68 intron3 Tgut gi|224053141|ref|XP_002192609.1| -1 92 92 intron1 Tgut gi|224053141|ref|XP_002192609.1| -1 142 142 intron3 Tgut gi|224053141|ref|XP_002192609.1| -1 195 195 intron3 Tgut gi|224053141|ref|XP_002192609.1| -1 255 255 intron1 Amel gi|66549453|ref|XP_393536.2| -1 65 65 intron3 Amel gi|66549453|ref|XP_393536.2| -1 89 89 intron1 Amel gi|66549453|ref|XP_393536.2| -1 192 192 intron3 Nvit gi|156537448|ref|XP_001607033.1| -1 65 65 intron3 Nvit gi|156537448|ref|XP_001607033.1| -1 89 89 intron1 Nvit gi|156537448|ref|XP_001607033.1| -1 192 192 intron3 Apis gi|193643642|ref|XP_001947199.1| -1 67 67 intron3 Apis gi|193643642|ref|XP_001947199.1| -1 91 91 intron1 Apis gi|193643642|ref|XP_001947199.1| -1 141 141 intron3 Apis gi|193643642|ref|XP_001947199.1| -1 243 243 intron2 Apis gi|193643642|ref|XP_001947199.1| -1 290 290 intron1 Bmor gnl|Bmor|BGIBMGA004646-PA -1 71 71 intron3 Bmor gnl|Bmor|BGIBMGA004646-PA -1 146 146 intron3 Bmor gnl|Bmor|BGIBMGA004646-PA -1 237 237 intron1 Tcas gi|91091890|ref|XP_970295.1| -1 65 65 intron3 Tcas gi|91091890|ref|XP_970295.1| -1 241 241 intron2 Tcas gi|91091890|ref|XP_970295.1| -1 288 288 intron1