#| ca.umontreal.iro.evolution.introns.WriteIntronTable Tue Apr 12 01:41:03 EDT 2011 #| System: Mac OS X 10.6.7 x86_64 #| Java: Java HotSpot(TM) 64-Bit Server VM 19.1-b02-334 (1.6.0_24-b07-334-10M3326) mixed mode, Apple Inc. #| Current directory: /Users/csuros/Work/introns/larger-data/denovo/census2010/pipeline/3MCMC/HTML #| Arguments: #| Input alignment: alignments/KOG1088.faa #| Intron position list parenthesis: {i .. i} #| Intron positions are relative to: sequence intron1 0,100,200 intron2 0,80,160 intron3 0,50,100 Cbri gi|268533102|ref|XP_002631679.1| -1 48 48 intron3 Cbri gi|268533102|ref|XP_002631679.1| -1 107 107 intron3 Cbri gi|268533102|ref|XP_002631679.1| -1 140 140 intron3 Cele gi|17531497|ref|NP_497021.1| -1 48 48 intron3 Pyoe gi|82595085|ref|XP_725699.1| -1 54 54 intron1 Pfal gi|258597640|ref|XP_001348245.2| -1 11 11 intron2 Pfal gi|258597640|ref|XP_001348245.2| -1 64 64 intron3 Pfal gi|258597640|ref|XP_001348245.2| -1 93 93 intron3 Pfal gi|258597640|ref|XP_001348245.2| -1 115 115 intron1 Pviv gi|156102362|ref|XP_001616874.1| -1 31 31 intron3 Pviv gi|156102362|ref|XP_001616874.1| -1 60 60 intron3 Pviv gi|156102362|ref|XP_001616874.1| -1 82 82 intron1 Ddis gi|66808727|ref|XP_638086.1| -1 89 89 intron3 Dpur gnl|Dicpu1|153040 -1 89 89 intron3 Aano gnl|Auran1|69798 -1 14 14 intron2 Aano gnl|Auran1|69798 -1 32 32 intron3 Aano gnl|Auran1|69798 -1 79 79 intron3 Ehux gnl|Emihu1|59173 -1 44 44 intron3 Ehux gnl|Emihu1|59173 -1 94 94 intron3 Mpus gnl|MicpuC2|70810 -1 14 14 intron3 Mpus gnl|MicpuC2|70810 -1 39 39 intron1 Mpus gnl|MicpuC2|70810 -1 57 57 intron3 Mpus gnl|MicpuC2|70810 -1 109 109 intron2 M299 gi|255070829|ref|XP_002507496.1| -1 14 14 intron3 M299 gi|255070829|ref|XP_002507496.1| -1 39 39 intron1 M299 gi|255070829|ref|XP_002507496.1| -1 57 57 intron3 M299 gi|255070829|ref|XP_002507496.1| -1 109 109 intron2 Oluc gi|145341533|ref|XP_001415861.1| -1 14 14 intron3 Crei gi|159465733|ref|XP_001691077.1| -1 48 48 intron1 Crei gi|159465733|ref|XP_001691077.1| -1 68 68 intron3 Crei gi|159465733|ref|XP_001691077.1| -1 99 99 intron3 Vcar gnl|Volca1|73677 -1 39 39 intron1 Vcar gnl|Volca1|73677 -1 59 59 intron3 Vcar gnl|Volca1|73677 -1 90 90 intron3 C169 gnl|Coc_C169_1|22008 -1 61 61 intron1 Ppat gi|168020978|ref|XP_001763019.1| -1 59 59 intron3 Ppat gi|168020978|ref|XP_001763019.1| -1 89 89 intron3 Smoe gnl|Selmo1|438712 -1 59 59 intron3 Smoe gnl|Selmo1|438712 -1 89 89 intron3 Sman gi|256076110|ref|XP_002574357.1| -1 26 26 intron3 Sman gi|256076110|ref|XP_002574357.1| -1 60 60 intron3 Apis gi|193579954|ref|XP_001951392.1| -1 26 26 intron3 Apis gi|193579954|ref|XP_001951392.1| -1 60 60 intron3 Apis gi|193579954|ref|XP_001951392.1| -1 91 91 intron3 Dmel gi|21358217|ref|NP_649293.1| -1 26 26 intron3 Dmel gi|21358217|ref|NP_649293.1| -1 60 60 intron3 Dmoj gi|195126619|ref|XP_002007768.1| -1 26 26 intron3 Dmoj gi|195126619|ref|XP_002007768.1| -1 60 60 intron3 Aaeg gi|157130004|ref|XP_001655512.1| -1 26 26 intron3 Aaeg gi|157130004|ref|XP_001655512.1| -1 60 60 intron3 Agam gi|31247998|ref|XP_316602.1| -1 26 26 intron3 Agam gi|31247998|ref|XP_316602.1| -1 60 60 intron3 Prsp lcl|PTSG_11519T0 -1 25 25 intron3 Prsp lcl|PTSG_11519T0 -1 59 59 intron3 Prsp lcl|PTSG_11519T0 -1 91 91 intron3 Mbre gi|167524745|ref|XP_001746708.1| -1 25 25 intron3 Mbre gi|167524745|ref|XP_001746708.1| -1 59 59 intron3 Mbre gi|167524745|ref|XP_001746708.1| -1 90 90 intron3 Hrob gnl|Helro1|166404 -1 26 26 intron3 Hrob gnl|Helro1|166404 -1 60 60 intron3 Hrob gnl|Helro1|166404 -1 91 91 intron3 Tadh gi|195998339|ref|XP_002109038.1| -1 25 25 intron3 Tadh gi|195998339|ref|XP_002109038.1| -1 59 59 intron3 Tadh gi|195998339|ref|XP_002109038.1| -1 90 90 intron3 Spur gi|115675628|ref|XP_784899.2| -1 18 18 intron3 Spur gi|115675628|ref|XP_784899.2| -1 52 52 intron3 Spur gi|115675628|ref|XP_784899.2| -1 83 83 intron3 Spur gi|115675628|ref|XP_784899.2| -1 115 115 intron3 Cint gi|198420552|ref|XP_002129541.1| -1 33 33 intron3 Cint gi|198420552|ref|XP_002129541.1| -1 67 67 intron3 Drer gi|66472212|ref|NP_001018588.1| -1 25 25 intron3 Drer gi|66472212|ref|NP_001018588.1| -1 59 59 intron3 Drer gi|66472212|ref|NP_001018588.1| -1 90 90 intron3 CspI gnl|Capca1|18807 -1 26 26 intron3 CspI gnl|Capca1|18807 -1 60 60 intron3 CspI gnl|Capca1|18807 -1 91 91 intron3 Isca gi|241122398|ref|XP_002403549.1| -1 26 26 intron3 Isca gi|241122398|ref|XP_002403549.1| -1 60 60 intron3 Isca gi|241122398|ref|XP_002403549.1| -1 91 91 intron3 Nvec gi|156407864|ref|XP_001641577.1| -1 25 25 intron3 Nvec gi|156407864|ref|XP_001641577.1| -1 59 59 intron3 Nvec gi|156407864|ref|XP_001641577.1| -1 90 90 intron3 Bflo gi|260790207|ref|XP_002590135.1| -1 25 25 intron3 Bflo gi|260790207|ref|XP_002590135.1| -1 59 59 intron3 Bflo gi|260790207|ref|XP_002590135.1| -1 90 90 intron3 Phum gi|242023082|ref|XP_002431965.1| -1 19 19 intron3 Tcas gi|91079885|ref|XP_967890.1| -1 26 26 intron3 Dpul gnl|Dappu1|230231 -1 26 26 intron3 Dpul gnl|Dappu1|230231 -1 60 60 intron3 Dpul gnl|Dappu1|230231 -1 91 91 intron3 Amel gi|110767768|ref|XP_001119891.1| -1 26 26 intron3 Amel gi|110767768|ref|XP_001119891.1| -1 62 62 intron1 Nvit gi|156550368|ref|XP_001607595.1| -1 26 26 intron3 Nvit gi|156550368|ref|XP_001607595.1| -1 60 60 intron3 Cimm gi|119185077|ref|XP_001243360.1| -1 62 62 intron3 Cimm gi|119185077|ref|XP_001243360.1| -1 126 126 intron1 Uree gi|258564604|ref|XP_002583047.1| -1 62 62 intron3 Uree gi|258564604|ref|XP_002583047.1| -1 99 99 intron1 Mfij gnl|Mycfi1|86837 -1 62 62 intron3 Mgra gnl|Mycgr3|45617 -1 62 62 intron3 Pnod gi|169601226|ref|XP_001794035.1| -1 62 62 intron3 Prep gi|189193615|ref|XP_001933146.1| -1 62 62 intron3 Gzea gi|46126125|ref|XP_387616.1| -1 62 62 intron3 Bfuc gi|154311652|ref|XP_001555155.1| -1 12 12 intron3 Sscl gi|156061823|ref|XP_001596834.1| -1 62 62 intron3 Mgri gi|145612073|ref|XP_001411786.1| -1 62 62 intron3 Ncra gi|85103652|ref|XP_961567.1| -1 62 62 intron3 Spun gnl|Spun1|SPPG_00814T0 -1 2 2 intron2 Spun gnl|Spun1|SPPG_00814T0 -1 61 61 intron3 Spun gnl|Spun1|SPPG_00814T0 -1 89 89 intron3 Sjap gi|213410383|ref|XP_002175961.1| -1 6 6 intron1 Sjap gi|213410383|ref|XP_002175961.1| -1 62 62 intron3 Spom gi|19113826|ref|NP_592914.1| -1 6 6 intron1 Spom gi|19113826|ref|NP_592914.1| -1 62 62 intron3 Spom gi|19113826|ref|NP_592914.1| -1 93 93 intron3 Cowc lcl|CAOG_02351T0 -1 12 12 intron3 Cowc lcl|CAOG_02351T0 -1 32 32 intron3 Cowc lcl|CAOG_02351T0 -1 58 58 intron3 Cowc lcl|CAOG_02351T0 -1 88 88 intron3 Mlar gnl|Mellp1|40640 -1 63 63 intron3 Mlar gnl|Mellp1|40640 -1 98 98 intron3 Mlar gnl|Mellp1|40640 -1 124 124 intron3 Pgra lcl|PGTG_19500 -1 63 63 intron3 Pgra lcl|PGTG_19500 -1 98 98 intron3 Pgra lcl|PGTG_19500 -1 124 124 intron3 Pbla gnl|Phybl1|31447 -1 60 60 intron3 Pbla gnl|Phybl1|31447 -1 90 90 intron3 Rory lcl|RO3G_13600 -1 60 60 intron3 Rory lcl|RO3G_13600 -1 90 90 intron3 Mcir gnl|Mucci2|155124 -1 53 53 intron3 Mcir gnl|Mucci2|155124 -1 83 83 intron3 Cneo gi|58264626|ref|XP_569469.1| -1 15 15 intron1 Cneo gi|58264626|ref|XP_569469.1| -1 61 61 intron3 Cneo gi|58264626|ref|XP_569469.1| -1 89 89 intron3 Cneo gi|58264626|ref|XP_569469.1| -1 115 115 intron3 Umay gi|71024417|ref|XP_762438.1| -1 174 174 intron3 Fchr gnl|Phchr1|121845 -1 1 1 intron3 Fchr gnl|Phchr1|121845 -1 61 61 intron3 Fchr gnl|Phchr1|121845 -1 89 89 intron3 Fchr gnl|Phchr1|121845 -1 115 115 intron3 Fchr gnl|Phchr1|121845 -1 122 122 intron3 Abis gnl|Agabi_varbisH97_2|228611 -1 61 61 intron3 Abis gnl|Agabi_varbisH97_2|228611 -1 89 89 intron3 Abis gnl|Agabi_varbisH97_2|228611 -1 115 115 intron3 Ccin gi|169843333|ref|XP_001828396.1| -1 61 61 intron3 Ccin gi|169843333|ref|XP_001828396.1| -1 89 89 intron3 Ccin gi|169843333|ref|XP_001828396.1| -1 115 115 intron3 Lbic gnl|Lacbi1|301169 -1 61 61 intron3 Lbic gnl|Lacbi1|301169 -1 89 89 intron3 Lbic gnl|Lacbi1|301169 -1 115 115 intron3