, including all inherited members.
_classname_() | PLearn::Molecule | [static] |
_classname_() | PLearn::Molecule | [static] |
_getOptionList_() | PLearn::Molecule | [static] |
_getOptionList_() | PLearn::Molecule | [static] |
_getRemoteMethodMap_() | PLearn::Molecule | [static] |
_getRemoteMethodMap_() | PLearn::Molecule | [static] |
_isa_(const Object *o) | PLearn::Molecule | [static] |
_isa_(const Object *o) | PLearn::Molecule | [static] |
_new_instance_for_typemap_() | PLearn::Molecule | [static] |
_new_instance_for_typemap_() | PLearn::Molecule | [static] |
_static_initialize_() | PLearn::Molecule | [static] |
_static_initialize_() | PLearn::Molecule | [static] |
_static_initializer_ | PLearn::Molecule | [static] |
asString() const | PLearn::Object | [virtual] |
asStringRemoteTransmit() const | PLearn::Object | [virtual] |
build() | PLearn::Molecule | [virtual] |
build() | PLearn::Molecule | [virtual] |
build_() | PLearn::Molecule | [private] |
build_() | PLearn::Molecule | [private] |
call(const string &methodname, int nargs, PStream &io) | PLearn::Object | [virtual] |
changeOption(const string &optionname, const string &value) | PLearn::Object | |
changeOptions(const map< string, string > &name_value) | PLearn::Object | [virtual] |
chem | PLearn::Molecule | |
classname() const | PLearn::Molecule | [virtual] |
classname() const | PLearn::Molecule | [virtual] |
coordinates | PLearn::Molecule | |
declareMethods(RemoteMethodMap &rmm) | PLearn::Object | [protected, static] |
declareOptions(OptionList &ol) | PLearn::Molecule | [protected, static] |
declareOptions(OptionList &ol) | PLearn::Molecule | [protected, static] |
declaringFile() | PLearn::Molecule | [inline, static] |
declaringFile() | PLearn::Molecule | [inline, static] |
deepCopy(CopiesMap &copies) const | PLearn::Molecule | [virtual] |
deepCopy(CopiesMap &copies) const | PLearn::Molecule | [virtual] |
deepCopyNoMap() | PLearn::Object | |
feature_names | PLearn::Molecule | |
features | PLearn::Molecule | |
geom | PLearn::Molecule | |
getOption(const string &optionname) const | PLearn::Object | |
getOptionList() const | PLearn::Molecule | [virtual] |
getOptionList() const | PLearn::Molecule | [virtual] |
getOptionMap() const | PLearn::Molecule | [virtual] |
getOptionMap() const | PLearn::Molecule | [virtual] |
getOptionsToRemoteTransmit() const | PLearn::Object | [virtual] |
getOptionsToSave() const | PLearn::Object | [virtual] |
getRemoteMethodMap() const | PLearn::Molecule | [virtual] |
getRemoteMethodMap() const | PLearn::Molecule | [virtual] |
getVrmlType(const std::string &name) | PLearn::Molecule | [static] |
getVrmlVertexCoords(const std::string &name, PLearn::Mat &xmat) | PLearn::Molecule | [static] |
hasOption(const string &optionname) const | PLearn::Object | |
info() const | PLearn::Object | [virtual] |
inherited typedef | PLearn::Molecule | [private] |
inherited typedef | PLearn::Molecule | [private] |
load(const PPath &filename) | PLearn::Object | [virtual] |
makeDeepCopyFromShallowCopy(CopiesMap &copies) | PLearn::Molecule | [virtual] |
makeDeepCopyFromShallowCopy(CopiesMap &copies) | PLearn::Molecule | [virtual] |
Molecule() | PLearn::Molecule | |
Molecule(PLearn::Mat _chem, PLearn::Mat _geom, string vrml_file="") | PLearn::Molecule | |
Molecule() | PLearn::Molecule | |
Molecule(const PPath &filename) | PLearn::Molecule | |
n_features() | PLearn::Molecule | [inline, virtual] |
n_points() | PLearn::Molecule | [inline] |
newread(PStream &in, unsigned int id=UINT_MAX) | PLearn::Object | |
newwrite(PStream &out) const | PLearn::Object | [virtual] |
Object(bool call_build_=false) | PLearn::Object | |
oldread(istream &in) | PLearn::Object | [virtual] |
parseOptionName(const string &optionname, Object *&final_object, OptionList::iterator &option_iter, string &option_index) | PLearn::Object | |
parseOptionName(const string &optionname, const Object *&final_object, OptionList::iterator &option_iter, string &option_index) const | PLearn::Object | |
PPointable() | PLearn::PPointable | [inline] |
PPointable(const PPointable &other) | PLearn::PPointable | [inline] |
prepareToSendResults(PStream &out, int nres) | PLearn::Object | [static] |
read(istream &in) | PLearn::Object | [virtual] |
readFromAMATFile(const PPath &filename) | PLearn::Molecule | [protected, virtual] |
readFromFile(const PPath &filename) | PLearn::Molecule | [virtual] |
readFromVRMLFile(const PPath &filename) | PLearn::Molecule | [protected, virtual] |
readMolecule(const std::string &fileName) | PLearn::Molecule | [static] |
readMolecules(const std::string &fileName, std::vector< PMolecule > &storage) | PLearn::Molecule | [static] |
readOptionVal(PStream &in, const string &optionname, unsigned int id=UINT_MAX) | PLearn::Object | |
readVrml(const std::string &name, PLearn::SurfMesh &sm) | PLearn::Molecule | [static] |
ref() const | PLearn::PPointable | [inline] |
run() | PLearn::Object | [virtual] |
save(const PPath &filename) const | PLearn::Object | [virtual] |
setOption(const string &optionname, const string &value) | PLearn::Object | |
unref() const | PLearn::PPointable | [inline] |
usage() const | PLearn::PPointable | [inline] |
vrml_face_set | PLearn::Molecule | |
vrml_file | PLearn::Molecule | |
vrml_line_set | PLearn::Molecule | |
write(ostream &out) const | PLearn::Object | [virtual] |
writeOptionVal(PStream &out, const string &optionname) const | PLearn::Object | |
writeToAMATFile(const PPath &filename) | PLearn::Molecule | [protected, virtual] |
writeToFile(const PPath &filename) | PLearn::Molecule | [virtual] |
writeToVRMLFile(const PPath &filename) | PLearn::Molecule | [protected, virtual] |
writeVrml(const std::string &name, const std::string &to, PLearn::SurfMesh &sm) | PLearn::Molecule | [static] |
~Object() | PLearn::Object | [virtual] |
~PPointable() | PLearn::PPointable | [inline, virtual] |