, including all inherited members.
_classname_() | PLearn::ChemicalICP | [static] |
_getOptionList_() | PLearn::ChemicalICP | [static] |
_getRemoteMethodMap_() | PLearn::ChemicalICP | [static] |
_isa_(const Object *o) | PLearn::ChemicalICP | [static] |
_new_instance_for_typemap_() | PLearn::ChemicalICP | [static] |
_static_initialize_() | PLearn::ChemicalICP | [static] |
_static_initializer_ | PLearn::ChemicalICP | [static] |
all_mol_features | PLearn::ChemicalICP | |
all_template_feat_dev | PLearn::ChemicalICP | |
all_template_features | PLearn::ChemicalICP | |
angle_t | PLearn::ChemicalICP | |
asString() const | PLearn::Object | [virtual] |
asStringRemoteTransmit() const | PLearn::Object | [virtual] |
build() | PLearn::ChemicalICP | [virtual] |
build_() | PLearn::ChemicalICP | [private] |
cacheFeatureDistances() | PLearn::ChemicalICP | [protected, virtual] |
call(const string &methodname, int nargs, PStream &io) | PLearn::Object | [virtual] |
changeOption(const string &optionname, const string &value) | PLearn::Object | |
changeOptions(const map< string, string > &name_value) | PLearn::Object | [virtual] |
ChemicalICP() | PLearn::ChemicalICP | |
ChemicalICP(const MolTemplate &the_template, const Mol &the_molecule, const TVec< string > &the_feature_names=TVec< string >(), string the_weighting_method="features_sigmoid", const Var &the_weighting_params=Var(Vec(2, 1)), string the_matching_method="exhaustive") | PLearn::ChemicalICP | |
classname() const | PLearn::ChemicalICP | [virtual] |
computeUsedFeatures() | PLearn::ChemicalICP | [protected, virtual] |
computeVariables() | PLearn::ChemicalICP | [protected, virtual] |
computeWeightedDistance(const Mat &tr_template_coords, const Mat &matched_mol_coords) | PLearn::ChemicalICP | [protected, virtual] |
computeWeights(const Mat &tr_template_coords, const Mat &matched_mol_coords) | PLearn::ChemicalICP | [protected, virtual] |
declareMethods(RemoteMethodMap &rmm) | PLearn::Object | [protected, static] |
declareOptions(OptionList &ol) | PLearn::ChemicalICP | [protected, static] |
declaringFile() | PLearn::ChemicalICP | [inline, static] |
deepCopy(CopiesMap &copies) const | PLearn::ChemicalICP | [virtual] |
deepCopyNoMap() | PLearn::Object | |
error | PLearn::ChemicalICP | |
error_t | PLearn::ChemicalICP | |
every_x | PLearn::ChemicalICP | [protected] |
feat_distances2 | PLearn::ChemicalICP | [protected] |
feature_names | PLearn::ChemicalICP | |
forgetMemorizedAlignments() | PLearn::ChemicalICP | |
getOption(const string &optionname) const | PLearn::Object | |
getOptionList() const | PLearn::ChemicalICP | [virtual] |
getOptionMap() const | PLearn::ChemicalICP | [virtual] |
getOptionsToRemoteTransmit() const | PLearn::Object | [virtual] |
getOptionsToSave() const | PLearn::Object | [virtual] |
getRemoteMethodMap() const | PLearn::ChemicalICP | [virtual] |
hasOption(const string &optionname) const | PLearn::Object | |
info() const | PLearn::Object | [virtual] |
inherited typedef | PLearn::ChemicalICP | [private] |
initial_angles_list | PLearn::ChemicalICP | |
initial_angles_step | PLearn::ChemicalICP | |
load(const PPath &filename) | PLearn::Object | [virtual] |
makeDeepCopyFromShallowCopy(CopiesMap &copies) | PLearn::ChemicalICP | [virtual] |
matching | PLearn::ChemicalICP | |
matching_method | PLearn::ChemicalICP | |
matching_neighbors | PLearn::ChemicalICP | |
matchNearestNeighbors(const Mat &tr_template_coords, const Mat &matched_mol_coords) | PLearn::ChemicalICP | [protected, virtual] |
max_iter | PLearn::ChemicalICP | |
mem_aligned_molecules | PLearn::ChemicalICP | [protected] |
mem_count | PLearn::ChemicalICP | [protected] |
mem_error | PLearn::ChemicalICP | [protected] |
mem_matching | PLearn::ChemicalICP | [protected] |
mem_rotation | PLearn::ChemicalICP | [protected] |
mem_translation | PLearn::ChemicalICP | [protected] |
memory | PLearn::ChemicalICP | |
minimizeWeightedDistance(const Mat &tr_template_coords, const Mat &matched_mol_coords, real &delta_rot_length, real &delta_trans_length) | PLearn::ChemicalICP | [protected, virtual] |
mol_coordinates | PLearn::ChemicalICP | |
mol_feat_indices | PLearn::ChemicalICP | |
mol_template | PLearn::ChemicalICP | |
molecule | PLearn::ChemicalICP | |
newread(PStream &in, unsigned int id=UINT_MAX) | PLearn::Object | |
newwrite(PStream &out) const | PLearn::Object | [virtual] |
Object(bool call_build_=false) | PLearn::Object | |
oldread(istream &in) | PLearn::Object | [virtual] |
other_base_properties | PLearn::ChemicalICP | |
parseOptionName(const string &optionname, Object *&final_object, OptionList::iterator &option_iter, string &option_index) | PLearn::Object | |
parseOptionName(const string &optionname, const Object *&final_object, OptionList::iterator &option_iter, string &option_index) const | PLearn::Object | |
PPointable() | PLearn::PPointable | [inline] |
PPointable(const PPointable &other) | PLearn::PPointable | [inline] |
prepareToSendResults(PStream &out, int nres) | PLearn::Object | [static] |
read(istream &in) | PLearn::Object | [virtual] |
readOptionVal(PStream &in, const string &optionname, unsigned int id=UINT_MAX) | PLearn::Object | |
ref() const | PLearn::PPointable | [inline] |
rotation | PLearn::ChemicalICP | |
run() | PLearn::ChemicalICP | [virtual] |
save(const PPath &filename) const | PLearn::Object | [virtual] |
saveMatch(const PPath &filename) | PLearn::ChemicalICP | [virtual] |
setMolecule(const Mol &the_molecule) | PLearn::ChemicalICP | [virtual] |
setOption(const string &optionname, const string &value) | PLearn::Object | |
template_coordinates | PLearn::ChemicalICP | |
template_feat_indices | PLearn::ChemicalICP | |
template_geom_dev | PLearn::ChemicalICP | |
trans_t | PLearn::ChemicalICP | |
translation | PLearn::ChemicalICP | |
unref() const | PLearn::PPointable | [inline] |
usage() const | PLearn::PPointable | [inline] |
used_feat_names | PLearn::ChemicalICP | [protected] |
used_mol_features | PLearn::ChemicalICP | |
used_properties | PLearn::ChemicalICP | |
used_template_feat_dev | PLearn::ChemicalICP | |
used_template_features | PLearn::ChemicalICP | |
weighting_method | PLearn::ChemicalICP | |
weighting_params | PLearn::ChemicalICP | |
weights | PLearn::ChemicalICP | |
write(ostream &out) const | PLearn::Object | [virtual] |
writeOptionVal(PStream &out, const string &optionname) const | PLearn::Object | |
~Object() | PLearn::Object | [virtual] |
~PPointable() | PLearn::PPointable | [inline, virtual] |