PLearn 0.1
PLearn::ChemicalICP Member List
This is the complete list of members for PLearn::ChemicalICP, including all inherited members.
_classname_()PLearn::ChemicalICP [static]
_getOptionList_()PLearn::ChemicalICP [static]
_getRemoteMethodMap_()PLearn::ChemicalICP [static]
_isa_(const Object *o)PLearn::ChemicalICP [static]
_new_instance_for_typemap_()PLearn::ChemicalICP [static]
_static_initialize_()PLearn::ChemicalICP [static]
_static_initializer_PLearn::ChemicalICP [static]
all_mol_featuresPLearn::ChemicalICP
all_template_feat_devPLearn::ChemicalICP
all_template_featuresPLearn::ChemicalICP
angle_tPLearn::ChemicalICP
asString() const PLearn::Object [virtual]
asStringRemoteTransmit() const PLearn::Object [virtual]
build()PLearn::ChemicalICP [virtual]
build_()PLearn::ChemicalICP [private]
cacheFeatureDistances()PLearn::ChemicalICP [protected, virtual]
call(const string &methodname, int nargs, PStream &io)PLearn::Object [virtual]
changeOption(const string &optionname, const string &value)PLearn::Object
changeOptions(const map< string, string > &name_value)PLearn::Object [virtual]
ChemicalICP()PLearn::ChemicalICP
ChemicalICP(const MolTemplate &the_template, const Mol &the_molecule, const TVec< string > &the_feature_names=TVec< string >(), string the_weighting_method="features_sigmoid", const Var &the_weighting_params=Var(Vec(2, 1)), string the_matching_method="exhaustive")PLearn::ChemicalICP
classname() const PLearn::ChemicalICP [virtual]
computeUsedFeatures()PLearn::ChemicalICP [protected, virtual]
computeVariables()PLearn::ChemicalICP [protected, virtual]
computeWeightedDistance(const Mat &tr_template_coords, const Mat &matched_mol_coords)PLearn::ChemicalICP [protected, virtual]
computeWeights(const Mat &tr_template_coords, const Mat &matched_mol_coords)PLearn::ChemicalICP [protected, virtual]
declareMethods(RemoteMethodMap &rmm)PLearn::Object [protected, static]
declareOptions(OptionList &ol)PLearn::ChemicalICP [protected, static]
declaringFile()PLearn::ChemicalICP [inline, static]
deepCopy(CopiesMap &copies) const PLearn::ChemicalICP [virtual]
deepCopyNoMap()PLearn::Object
errorPLearn::ChemicalICP
error_tPLearn::ChemicalICP
every_xPLearn::ChemicalICP [protected]
feat_distances2PLearn::ChemicalICP [protected]
feature_namesPLearn::ChemicalICP
forgetMemorizedAlignments()PLearn::ChemicalICP
getOption(const string &optionname) const PLearn::Object
getOptionList() const PLearn::ChemicalICP [virtual]
getOptionMap() const PLearn::ChemicalICP [virtual]
getOptionsToRemoteTransmit() const PLearn::Object [virtual]
getOptionsToSave() const PLearn::Object [virtual]
getRemoteMethodMap() const PLearn::ChemicalICP [virtual]
hasOption(const string &optionname) const PLearn::Object
info() const PLearn::Object [virtual]
inherited typedefPLearn::ChemicalICP [private]
initial_angles_listPLearn::ChemicalICP
initial_angles_stepPLearn::ChemicalICP
load(const PPath &filename)PLearn::Object [virtual]
makeDeepCopyFromShallowCopy(CopiesMap &copies)PLearn::ChemicalICP [virtual]
matchingPLearn::ChemicalICP
matching_methodPLearn::ChemicalICP
matching_neighborsPLearn::ChemicalICP
matchNearestNeighbors(const Mat &tr_template_coords, const Mat &matched_mol_coords)PLearn::ChemicalICP [protected, virtual]
max_iterPLearn::ChemicalICP
mem_aligned_moleculesPLearn::ChemicalICP [protected]
mem_countPLearn::ChemicalICP [protected]
mem_errorPLearn::ChemicalICP [protected]
mem_matchingPLearn::ChemicalICP [protected]
mem_rotationPLearn::ChemicalICP [protected]
mem_translationPLearn::ChemicalICP [protected]
memoryPLearn::ChemicalICP
minimizeWeightedDistance(const Mat &tr_template_coords, const Mat &matched_mol_coords, real &delta_rot_length, real &delta_trans_length)PLearn::ChemicalICP [protected, virtual]
mol_coordinatesPLearn::ChemicalICP
mol_feat_indicesPLearn::ChemicalICP
mol_templatePLearn::ChemicalICP
moleculePLearn::ChemicalICP
newread(PStream &in, unsigned int id=UINT_MAX)PLearn::Object
newwrite(PStream &out) const PLearn::Object [virtual]
Object(bool call_build_=false)PLearn::Object
oldread(istream &in)PLearn::Object [virtual]
other_base_propertiesPLearn::ChemicalICP
parseOptionName(const string &optionname, Object *&final_object, OptionList::iterator &option_iter, string &option_index)PLearn::Object
parseOptionName(const string &optionname, const Object *&final_object, OptionList::iterator &option_iter, string &option_index) const PLearn::Object
PPointable()PLearn::PPointable [inline]
PPointable(const PPointable &other)PLearn::PPointable [inline]
prepareToSendResults(PStream &out, int nres)PLearn::Object [static]
read(istream &in)PLearn::Object [virtual]
readOptionVal(PStream &in, const string &optionname, unsigned int id=UINT_MAX)PLearn::Object
ref() const PLearn::PPointable [inline]
rotationPLearn::ChemicalICP
run()PLearn::ChemicalICP [virtual]
save(const PPath &filename) const PLearn::Object [virtual]
saveMatch(const PPath &filename)PLearn::ChemicalICP [virtual]
setMolecule(const Mol &the_molecule)PLearn::ChemicalICP [virtual]
setOption(const string &optionname, const string &value)PLearn::Object
template_coordinatesPLearn::ChemicalICP
template_feat_indicesPLearn::ChemicalICP
template_geom_devPLearn::ChemicalICP
trans_tPLearn::ChemicalICP
translationPLearn::ChemicalICP
unref() const PLearn::PPointable [inline]
usage() const PLearn::PPointable [inline]
used_feat_namesPLearn::ChemicalICP [protected]
used_mol_featuresPLearn::ChemicalICP
used_propertiesPLearn::ChemicalICP
used_template_feat_devPLearn::ChemicalICP
used_template_featuresPLearn::ChemicalICP
weighting_methodPLearn::ChemicalICP
weighting_paramsPLearn::ChemicalICP
weightsPLearn::ChemicalICP
write(ostream &out) const PLearn::Object [virtual]
writeOptionVal(PStream &out, const string &optionname) const PLearn::Object
~Object()PLearn::Object [virtual]
~PPointable()PLearn::PPointable [inline, virtual]
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