, including all inherited members.
| _classname_() | PLearn::ChemicalICP | [static] |
| _getOptionList_() | PLearn::ChemicalICP | [static] |
| _getRemoteMethodMap_() | PLearn::ChemicalICP | [static] |
| _isa_(const Object *o) | PLearn::ChemicalICP | [static] |
| _new_instance_for_typemap_() | PLearn::ChemicalICP | [static] |
| _static_initialize_() | PLearn::ChemicalICP | [static] |
| _static_initializer_ | PLearn::ChemicalICP | [static] |
| all_mol_features | PLearn::ChemicalICP | |
| all_template_feat_dev | PLearn::ChemicalICP | |
| all_template_features | PLearn::ChemicalICP | |
| angle_t | PLearn::ChemicalICP | |
| asString() const | PLearn::Object | [virtual] |
| asStringRemoteTransmit() const | PLearn::Object | [virtual] |
| build() | PLearn::ChemicalICP | [virtual] |
| build_() | PLearn::ChemicalICP | [private] |
| cacheFeatureDistances() | PLearn::ChemicalICP | [protected, virtual] |
| call(const string &methodname, int nargs, PStream &io) | PLearn::Object | [virtual] |
| changeOption(const string &optionname, const string &value) | PLearn::Object | |
| changeOptions(const map< string, string > &name_value) | PLearn::Object | [virtual] |
| ChemicalICP() | PLearn::ChemicalICP | |
| ChemicalICP(const MolTemplate &the_template, const Mol &the_molecule, const TVec< string > &the_feature_names=TVec< string >(), string the_weighting_method="features_sigmoid", const Var &the_weighting_params=Var(Vec(2, 1)), string the_matching_method="exhaustive") | PLearn::ChemicalICP | |
| classname() const | PLearn::ChemicalICP | [virtual] |
| computeUsedFeatures() | PLearn::ChemicalICP | [protected, virtual] |
| computeVariables() | PLearn::ChemicalICP | [protected, virtual] |
| computeWeightedDistance(const Mat &tr_template_coords, const Mat &matched_mol_coords) | PLearn::ChemicalICP | [protected, virtual] |
| computeWeights(const Mat &tr_template_coords, const Mat &matched_mol_coords) | PLearn::ChemicalICP | [protected, virtual] |
| declareMethods(RemoteMethodMap &rmm) | PLearn::Object | [protected, static] |
| declareOptions(OptionList &ol) | PLearn::ChemicalICP | [protected, static] |
| declaringFile() | PLearn::ChemicalICP | [inline, static] |
| deepCopy(CopiesMap &copies) const | PLearn::ChemicalICP | [virtual] |
| deepCopyNoMap() | PLearn::Object | |
| error | PLearn::ChemicalICP | |
| error_t | PLearn::ChemicalICP | |
| every_x | PLearn::ChemicalICP | [protected] |
| feat_distances2 | PLearn::ChemicalICP | [protected] |
| feature_names | PLearn::ChemicalICP | |
| forgetMemorizedAlignments() | PLearn::ChemicalICP | |
| getOption(const string &optionname) const | PLearn::Object | |
| getOptionList() const | PLearn::ChemicalICP | [virtual] |
| getOptionMap() const | PLearn::ChemicalICP | [virtual] |
| getOptionsToRemoteTransmit() const | PLearn::Object | [virtual] |
| getOptionsToSave() const | PLearn::Object | [virtual] |
| getRemoteMethodMap() const | PLearn::ChemicalICP | [virtual] |
| hasOption(const string &optionname) const | PLearn::Object | |
| info() const | PLearn::Object | [virtual] |
| inherited typedef | PLearn::ChemicalICP | [private] |
| initial_angles_list | PLearn::ChemicalICP | |
| initial_angles_step | PLearn::ChemicalICP | |
| load(const PPath &filename) | PLearn::Object | [virtual] |
| makeDeepCopyFromShallowCopy(CopiesMap &copies) | PLearn::ChemicalICP | [virtual] |
| matching | PLearn::ChemicalICP | |
| matching_method | PLearn::ChemicalICP | |
| matching_neighbors | PLearn::ChemicalICP | |
| matchNearestNeighbors(const Mat &tr_template_coords, const Mat &matched_mol_coords) | PLearn::ChemicalICP | [protected, virtual] |
| max_iter | PLearn::ChemicalICP | |
| mem_aligned_molecules | PLearn::ChemicalICP | [protected] |
| mem_count | PLearn::ChemicalICP | [protected] |
| mem_error | PLearn::ChemicalICP | [protected] |
| mem_matching | PLearn::ChemicalICP | [protected] |
| mem_rotation | PLearn::ChemicalICP | [protected] |
| mem_translation | PLearn::ChemicalICP | [protected] |
| memory | PLearn::ChemicalICP | |
| minimizeWeightedDistance(const Mat &tr_template_coords, const Mat &matched_mol_coords, real &delta_rot_length, real &delta_trans_length) | PLearn::ChemicalICP | [protected, virtual] |
| mol_coordinates | PLearn::ChemicalICP | |
| mol_feat_indices | PLearn::ChemicalICP | |
| mol_template | PLearn::ChemicalICP | |
| molecule | PLearn::ChemicalICP | |
| newread(PStream &in, unsigned int id=UINT_MAX) | PLearn::Object | |
| newwrite(PStream &out) const | PLearn::Object | [virtual] |
| Object(bool call_build_=false) | PLearn::Object | |
| oldread(istream &in) | PLearn::Object | [virtual] |
| other_base_properties | PLearn::ChemicalICP | |
| parseOptionName(const string &optionname, Object *&final_object, OptionList::iterator &option_iter, string &option_index) | PLearn::Object | |
| parseOptionName(const string &optionname, const Object *&final_object, OptionList::iterator &option_iter, string &option_index) const | PLearn::Object | |
| PPointable() | PLearn::PPointable | [inline] |
| PPointable(const PPointable &other) | PLearn::PPointable | [inline] |
| prepareToSendResults(PStream &out, int nres) | PLearn::Object | [static] |
| read(istream &in) | PLearn::Object | [virtual] |
| readOptionVal(PStream &in, const string &optionname, unsigned int id=UINT_MAX) | PLearn::Object | |
| ref() const | PLearn::PPointable | [inline] |
| rotation | PLearn::ChemicalICP | |
| run() | PLearn::ChemicalICP | [virtual] |
| save(const PPath &filename) const | PLearn::Object | [virtual] |
| saveMatch(const PPath &filename) | PLearn::ChemicalICP | [virtual] |
| setMolecule(const Mol &the_molecule) | PLearn::ChemicalICP | [virtual] |
| setOption(const string &optionname, const string &value) | PLearn::Object | |
| template_coordinates | PLearn::ChemicalICP | |
| template_feat_indices | PLearn::ChemicalICP | |
| template_geom_dev | PLearn::ChemicalICP | |
| trans_t | PLearn::ChemicalICP | |
| translation | PLearn::ChemicalICP | |
| unref() const | PLearn::PPointable | [inline] |
| usage() const | PLearn::PPointable | [inline] |
| used_feat_names | PLearn::ChemicalICP | [protected] |
| used_mol_features | PLearn::ChemicalICP | |
| used_properties | PLearn::ChemicalICP | |
| used_template_feat_dev | PLearn::ChemicalICP | |
| used_template_features | PLearn::ChemicalICP | |
| weighting_method | PLearn::ChemicalICP | |
| weighting_params | PLearn::ChemicalICP | |
| weights | PLearn::ChemicalICP | |
| write(ostream &out) const | PLearn::Object | [virtual] |
| writeOptionVal(PStream &out, const string &optionname) const | PLearn::Object | |
| ~Object() | PLearn::Object | [virtual] |
| ~PPointable() | PLearn::PPointable | [inline, virtual] |