1. Duplication, Reconciliation, Rearrangement: a follow-up 13 years later.
    Cédric Chauve, Nadia El-Mabrouk, Laurent Gueuguen, Magali Semeria
  2. Functional gene groups are concentrated within chromosomes, among chromosomes and in the nuclear space of the human genome
    Annelyse Thévenin, Liat Ein-Dor, Michal Ozery-Flato, Ron Shamir
  3. Gene family-free ancestral reconstruction
    Daniel Doerr, Annelyse Thevenin, Jens Stoye
  4. The functional basis of duplicate gene retention after core eudicot hexaploidization event
    Eric CH Chen and David Sankoff
  5. Tumor evolution history reconstructed using single cell sequencing data
    Andrew Wei Xu and Peter Park
  6. Consolidation of fractionated polyploid genomes in absence of a diploid reference genome
    Katharina Jahn, Chunfang Zheng and David Sankoff
  7. Aligning genomes under duplication, loss and rearrangements – An application to the study of tRNA evolution in Bacillus
    Billel Benzaid, Olivier Tremblay-Savard and Nadia El-Mabrouk
  8. Error detection and correction of gene trees
    Manuel Lafond, Krister Swenson and Nadia El-Mabrouk
  9. Phase change for the accuracy of the median value in estimating divergence time
    Arash Jamshidpey and David Sankoff
  10. Rates of Fractionation Under Different Hypotheses of Higher Order Polyploidization
    Alex Brandts and David Sankoff
  11. Probabilistic Approaches for GenomeRearrangement Analysis
    Fei Hu, Yu Lin, Bernard Moret and Jijun Tang
  12. Progressive reconstruction of ancestral gene orders
    Aïda Ouangraoua
  13. A robust regression approach to phylogenetic inference
    Ximing Xu, Chris Field and Katherine Dunn
  14. On the matrix median problem
    João Paulo Pereira Zanetti, Priscila Biller, and João Meidanis
  15. Parameter Advising and Accuracy Estimation for Protein Multiple Sequence Alignment
    Dan DeBlasio and John Kececioglu
  16. SEEK: a search engine for mining query-sensitive co-expression in large human expression compendia
    Qian Zhu, Arjun Krishnan, Aaron K Wong, Miriam R Aure, Lars A Bongo, Vessela N Kristensen, Moses Charikar, Kai Li, Olga Troyanskaya
  17. Title: Phylogenetic Reconstruction of Domain Shuffling in the MaGuK Protein Family.
    Maureen Stolzer, Katie Siewert, Minli Xu, and Dannie Durand.
  18. Towards Simultaneous Solution to Synteny Blocks Construction and Genome Rearrangements Problems
    Shuai Jiang and Max A. Alekseyev
  19. Hypergraph covering problems motivated by genome assembly
    Cedric Chauve, Murray Patterson and Ashok Rajaraman
  20. Scaffolding the genome of the Black Death agent
    Ashok Rajaraman, Cedric Chauve and Eric Tannier
  21. An amino acid substitution-selection model adjusts residue fitness to improve phylogenetic estimation
    HuaiChun Wang, Edward Susko and Andrew Roger
  22. Genome Aliquoting Revisited
    Robert Warren and David Sankoff
  23. LSHPlace: Fast phylogenetic placement using locality-sensitive hashing
    Dan Brown and Jakub Truszkowski
  24. Short Genomes and Deep Phylogenies
    Brona Brejova, Jakub Kovac, Jozef Nosek and Tomas Vinar
  25. On the 1.375-Approximation Algorithm for Sorting by Transpositions in O(nlog n) Time
    Luís Felipe Ignácio Cunha, Luis Antonio Brasil Kowada, Rodrigo de Alencar Hausen and Celina Miraglia Herrera de Figueiredo
  26. The first look at the genome of *Eulimnogammarus verrucosus*, an ancient environment amphipod.
    Lorena Rivarola-Duarte, Christian Otto, Frank Jühling, Stephan Schreiber, Jörg Hackermüller, Maxim Timofeyev, Steve Hoffmann, Till Luckenbach and Peter F. Stadler
  27. Genome-wide analysis of adaptive molecular evolution in the carnivorous plant Utricularia gibba
    Lorenzo Carretero-Paulet, Pablo Librado, Enrique Ibarra-Laclette, Tien-Hao Chang, Luis Herrera-Estrella, Julio Rozas, Victor A. Albert
  28. Genome-wide analysis reveals ongoing molecular evolutionary refinement of plastid-related gene functions during plant evolution
    Lorenzo Carretero-Paulet, Pablo Librado, Enrique Ibarra-Laclette, Tien-Hao Chang, Luis Herrera-Estrella, Julio Rozas and Victor A. Albert.
  29. Structure and function of the coffee genome
    Victor A. Albert (representing the Coffee Genome Consortium)
  30. The reversal median: A hybrid between a heuristic search approach and a genetic algorithm
    Ghada Badr, Manar Hosny, Al-Hanouf Al-Omar