Posters
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Duplication, Reconciliation, Rearrangement: a follow-up 13 years later.
Cédric Chauve, Nadia El-Mabrouk, Laurent Gueuguen, Magali Semeria
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Functional gene groups are concentrated within chromosomes, among chromosomes and in the nuclear space of the human genome
Annelyse Thévenin, Liat Ein-Dor, Michal Ozery-Flato, Ron Shamir
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Gene family-free ancestral reconstruction
Daniel Doerr, Annelyse Thevenin, Jens Stoye
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The functional basis of duplicate gene retention after core eudicot hexaploidization event
Eric CH Chen and David Sankoff
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Tumor evolution history reconstructed using single cell sequencing data
Andrew Wei Xu and Peter Park
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Consolidation of fractionated polyploid genomes in absence of a diploid reference genome
Katharina Jahn, Chunfang Zheng and David Sankoff
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Aligning genomes under duplication, loss and rearrangements – An application to the study of tRNA evolution in Bacillus
Billel Benzaid, Olivier Tremblay-Savard and Nadia El-Mabrouk
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Error detection and correction of gene trees
Manuel Lafond, Krister Swenson and Nadia El-Mabrouk
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Phase change for the accuracy of the median value in estimating divergence time
Arash Jamshidpey and David Sankoff
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Rates of Fractionation Under Different Hypotheses of Higher Order Polyploidization
Alex Brandts and David Sankoff
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Probabilistic Approaches for GenomeRearrangement Analysis
Fei Hu, Yu Lin, Bernard Moret and Jijun Tang
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Progressive reconstruction of ancestral gene orders
Aïda Ouangraoua
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A robust regression approach to phylogenetic inference
Ximing Xu, Chris Field and Katherine Dunn
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On the matrix median problem
João Paulo Pereira Zanetti, Priscila Biller, and João Meidanis
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Parameter Advising and Accuracy Estimation for Protein Multiple Sequence Alignment
Dan DeBlasio and John Kececioglu
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SEEK: a search engine for mining query-sensitive co-expression in large human expression compendia
Qian Zhu, Arjun Krishnan, Aaron K Wong, Miriam R Aure, Lars A Bongo, Vessela N Kristensen, Moses Charikar, Kai Li, Olga Troyanskaya
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Title: Phylogenetic Reconstruction of Domain Shuffling in the MaGuK Protein Family.
Maureen Stolzer, Katie Siewert, Minli Xu, and Dannie Durand.
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Towards Simultaneous Solution to Synteny Blocks Construction and Genome Rearrangements Problems
Shuai Jiang and Max A. Alekseyev
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Hypergraph covering problems motivated by genome assembly
Cedric Chauve, Murray Patterson and Ashok Rajaraman
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Scaffolding the genome of the Black Death agent
Ashok Rajaraman, Cedric Chauve and Eric Tannier
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An amino acid substitution-selection model adjusts residue fitness to improve phylogenetic estimation
HuaiChun Wang, Edward Susko and Andrew Roger
- Genome Aliquoting Revisited
Robert Warren and David Sankoff
- LSHPlace: Fast phylogenetic placement using locality-sensitive hashing
Dan Brown and Jakub Truszkowski
- Short Genomes and Deep Phylogenies
Brona Brejova, Jakub Kovac, Jozef Nosek and Tomas Vinar
- On the 1.375-Approximation Algorithm for Sorting by Transpositions in O(nlog n) Time
Luís Felipe Ignácio Cunha, Luis Antonio Brasil Kowada, Rodrigo de Alencar Hausen and Celina Miraglia Herrera de Figueiredo
- The first look at the genome of *Eulimnogammarus verrucosus*, an ancient environment amphipod.
Lorena Rivarola-Duarte, Christian Otto, Frank Jühling, Stephan Schreiber, Jörg Hackermüller, Maxim Timofeyev, Steve Hoffmann, Till Luckenbach and Peter F. Stadler
- Genome-wide analysis of adaptive molecular evolution in the carnivorous plant Utricularia gibba
Lorenzo Carretero-Paulet, Pablo Librado, Enrique Ibarra-Laclette, Tien-Hao Chang, Luis Herrera-Estrella, Julio Rozas, Victor A. Albert
- Genome-wide analysis reveals ongoing molecular evolutionary refinement of plastid-related gene functions during plant evolution
Lorenzo Carretero-Paulet, Pablo Librado, Enrique Ibarra-Laclette, Tien-Hao Chang, Luis Herrera-Estrella, Julio Rozas and Victor A. Albert.
- Structure and function of the coffee genome
Victor A. Albert (representing the Coffee Genome Consortium)
- The reversal median: A hybrid between a heuristic search approach and a genetic algorithm
Ghada Badr, Manar Hosny, Al-Hanouf Al-Omar