Nadia El-Mabrouk

Département d'informatique et de recherche opérationnelle (DIRO)


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Nadia El-Mabrouk
Département d'informatique et de recherche opérationnelle
Université de Montréal
Pavillon André-Aisenstadt
CP 6128 succ Centre-Ville
Montréal, Québec H3C 3J7


Office: 3163 Pav. André Aisenstadt
Tel.: 514-343-7481

14th RECOMB Comparative Genomics Satellite Workshop
October 11 - 14, 2016, Montreal
Submission Deadline: Monday June 13, 2016

Nadia El-Mabrouk is Full Professor at the Computer Science Department of the University of Montreal. She holds a Ph.D. in theoretical Computer Science from the University Paris VII, obtained in 1996. She is member of "Centre de Recherche Mathematiques" and "Centre Robert Cedergren" . Her expertise is in Computational Biology and her main research projects are on developing algorithmic and mathematical methods for comparative genomics. She is regularly involved in the program committee of bioinformatics and computational biology conferences such as RECOMB, RECOMB-CG, ISMB, ECCB and WABI.


OrthoAlign .zip directory
A software for the gene order alignment problem (alignment of orthologs), accounting for most genome-wide evolutionary events such as duplications, losses, rearrangements and substitutions. Described in ``Evolution of tRNA Repertoires in Bacillus with OrthoAlign'', by O. Tremblay-Savard, B. Benzaid, F.B. Lang and N. El-Mabrouk, submitted to Molecular Biology and Evolution.

GapAdj .tar.gz directory
Software described in: A Flexible Ancestral Genome Reconstruction Method based on Gapped Adjacencies Y. Gagnon, M. Blanchette and N. El-Mabrouk, submitted to RECOMB-CG, 2012.

The WEB interface for the software described in: Inferring the Evolutionary History of Gene Clusters from Phylogenetic and Gene Order Data. M. Lajoie, D. Bertrand and N. El-Mabrouk., Molecular Biology and Evolution, doi: 10.1093/molbev/msp271, 2009.